Plant FIBer expression Database

Potri.009G111000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16070 229 / 8e-74 PDV2 plastid division2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G149900
[exp]
463 / 1e-165 AT2G16070 220 / 4e-70 plastid division2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027574
[exp]
54 / 7e-08 AT5G53280 273 / 6e-92 plastid division1 (.1)
PFAM info
Representative CDS sequence
>Potri.009G111000.1 pacid=42771883 polypeptide=Potri.009G111000.1.p locus=Potri.009G111000 ID=Potri.009G111000.1.v4.1 annot-version=v4.1
ATGGAAGATGAGGGAATTGAAGCAGTGTTGGCTAAAGCTACAGACTTGAGATTCAAAATCAGTAATTGCATCCATAAAGCAACCACCAACAACATTTCCA
ACAACATAAAGAATCAATCTTTTGAAGAAGAGAAGCAAGAGAGTGACGGTCTTGAAGAGCAAGGAGAGAAGAGAAAGAGTCCTAAGAATTCGGAGTTTCT
TGATGGGGTTTTATTGAGTGAAGCAGAGGAAGGAGATGATGATGAGACTGAGAGGCTTTTGCGTATCCGTGATGCTCTCGAGTCCCTTGAGAACCAGCTC
TCTAACTTGCAGGCTTTGCAGCAGCAGCAACGTTATGAAAAAGAAGTAGCCCTTGGTGAGATTGAACATAGCCGCAAGATATTACTGGATAAGCTGAAGG
AGTACAATGGGGAAGACTTGGAAGTAATAAAGGAAGCCTCTGCATTTGCTGGGGAAACTGTGGAGCATAACAATGATCTCTTGCTTCCTCCATATCCTAG
CCGCCTTCCACAGTCCTTGATTTTAAACAATCGCCATCTTTCCCACTTTCATTCCACACACAAGTCCAATGGGATAATAACTGGTGAAGCAAAGAGGTAT
CAGGACGAGTCAGAAAGCAATCAGGTGCAAACTGCATCCAACTCAAGAAAAGGGTTGGGACACATCATCAGTGCAGCAGCCAAGACTGTGATTACCCTTG
TTGGTGTAATATCAATGTTAAGCTTGGCTGGTTTTGGACCTGGCATTGGAAAGAAAAATGTTCCTCTCAAGGTTTTAGGCTTGTGTCGGCAACCAGCAGC
TGATGAGAGGAAACAAATTGTTCAATGCCCACCTGGGAGAATCATGGTACAGGAAGATGGGGAAGTTCGCTGCGTCGTGAAAGAAAGGGTGGCAGTTCCT
TTTAATTCAGTGGCTGGAAAGCCTGATGTAAATTATGGGAGTGGATAG
AA sequence
>Potri.009G111000.1 pacid=42771883 polypeptide=Potri.009G111000.1.p locus=Potri.009G111000 ID=Potri.009G111000.1.v4.1 annot-version=v4.1
MEDEGIEAVLAKATDLRFKISNCIHKATTNNISNNIKNQSFEEEKQESDGLEEQGEKRKSPKNSEFLDGVLLSEAEEGDDDETERLLRIRDALESLENQL
SNLQALQQQQRYEKEVALGEIEHSRKILLDKLKEYNGEDLEVIKEASAFAGETVEHNNDLLLPPYPSRLPQSLILNNRHLSHFHSTHKSNGIITGEAKRY
QDESESNQVQTASNSRKGLGHIISAAAKTVITLVGVISMLSLAGFGPGIGKKNVPLKVLGLCRQPAADERKQIVQCPPGRIMVQEDGEVRCVVKERVAVP
FNSVAGKPDVNYGSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16070 PDV2 plastid division2 (.1.2) Potri.009G111000
[exp]
0 1
AT2G23200 Protein kinase superfamily pro... Potri.005G143200
[exp]
13.22 0.8496
AT3G52270 Transcription initiation facto... Potri.010G219800
[exp]
14.96 0.8261
AT3G63340 Protein phosphatase 2C family ... Potri.005G214500
[exp]
16.12 0.8325
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Potri.016G066000
[exp]
22.04 0.8482
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.007G085000
[exp]
32.01 0.8548
AT1G50575 Putative lysine decarboxylase ... Potri.008G180300
[exp]
33.04 0.8535
AT2G02590 unknown protein Potri.010G034400
[exp]
33.91 0.8471
AT5G39410 Saccharopine dehydrogenase (.... Potri.004G126100
[exp]
56.67 0.8320
AT2G40760 Rhodanese/Cell cycle control p... Potri.019G059400
[exp]
65.96 0.8327
AT5G18260 RING/U-box superfamily protein... Potri.013G060900
[exp]
74.18 0.8221

Potri.009G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.