Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66600 467 / 4e-158 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 375 / 3e-121 Protein of unknown function, DUF547 (.1) AT3G18900 334 / 2e-107 unknown protein AT1G76620 258 / 2e-78 Protein of unknown function, DUF547 (.1) AT1G21060 256 / 3e-78 Protein of unknown function, DUF547 (.1.2) AT5G47380 208 / 7e-59 Protein of unknown function, DUF547 (.1) AT1G43020 199 / 2e-57 Protein of unknown function, DUF547 (.1.2.3.4) AT3G13000 171 / 4e-46 Protein of unknown function, DUF547 (.1.2) AT1G16750 167 / 1e-44 Protein of unknown function, DUF547 (.1) AT2G39690 145 / 2e-37 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G150000 [exp] 1022 / 0 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 603 / 0 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 588 / 0 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 300 / 5e-94 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.001G157200 [exp] 209 / 1e-59 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.006G216800 [exp] 175 / 3e-47 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 165 / 2e-43 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 149 / 5e-38 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.010G202900 [exp] 147 / 9e-38 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016786 [exp] 570 / 0 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 569 / 0 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10040507 [exp] 251 / 6e-77 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10007795 [exp] 218 / 6e-61 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10011308 [exp] 180 / 2e-51 AT2G23700 157 / 4e-43 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 180 / 1e-48 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 173 / 4e-46 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 158 / 3e-41 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 155 / 5e-40 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10016114 [exp] 144 / 4e-39 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Potri.009G111100.7 pacid=42770889 polypeptide=Potri.009G111100.7.p locus=Potri.009G111100 ID=Potri.009G111100.7.v4.1 annot-version=v4.1 ATGCATGTAGTGAAGTGTCGGGCTGGTTCAACTTTTAAACAGTTCAAGTCCATGGAGGTAAGAGTTTCAAGGCACAAGCATTCTAATAGTGATCCATGTC AAAGAAAATTTGATGTTGCTAAACAAGAACCAAACAGCATCTTTGAAGATTTTTGTCACCTTAAATCGAAGAAAATGGGACAGCTTGAGGACTGTGTTGA AGTCAAGAAGAGGCAATTTCCTAACACAGAGGTTCAAAATTCATTAAAGCAGGAGATTTTAGATCTTCAAGACCGATTGCAGGACCAGGTTTTGGTGCGC CGTGCCTTGGAGAAGGCATTAAGTAGTAGGTCTTTTTCCCATGATATCATGACTGATAAGTCAATCCCCAAGCCCGCTAAGGATCTGATGAAGGAAATTG CAGTATTGGAACTGGAAGTAGTGTATATGGAACGATATCTTCTCTCACTGTATAGAAAAACATTTGACCAACAAGCATCATCTCTGTCAACCAAGGATGA AAGGGAGGATGAGAGATTCAAAATGAGTTCAGACGCACATAGAGGAATGTTTCCAGCAGTTCCTAGAAATGATATCGTGTCAGTTAAGGACAATTCCACT GATAATGCAAGTCATCTTACTTCACTAACCAAGGAATGCAATGGCACTTGGGGACTGGAAAAACTGTTAGATTCCAGCATTCATCGATGTCATTCCTCAA TATCTCAGCGGTCTATTGGAACTTCTCCTCCAACGCGATCTATAGTCAGAGCCATAGACTCATACCATTCTCTCCCACTGTCAATGCTGGAGCAAGCTTG GAATGGTACTTCAAATGCAACCAGTCTAGCAGATCATCTTGGAACCTCTATTCGCTATGGTGTAGTAGAGACGCCGAACTGGCTTTCTGAGGAGATGATC AGGAGGATCTCAGCCATATATTGTGAACTTGCAGACCCACCTTTGATCAATCCTGATTATGCTTCCTCACGTATTTCAGTCTCTTCATCACCAAACGAGT TTCCATCACAAGGCCATGGTGACATATGGAGCCCCCAGTACGGGAACTTTTCATCCTTCAACTCATCAATTGACAATCCTTTCCATATTGGAGCCTCCAA GGAATTCAGTGGACCATACTGCTCAATGGCCAAGGTCCAACACATTTGTAGAGATAGTCAAAAGCTGAGAGATATTCAACATAAGCTGCAAGATTTTAGG TCACTTGTCTCTCAGCTAGAAGGGGTTAATCCTAGGAAGATGAAACACGAGGAAAAACTAGCGTTTTGGATCAATGTGCACAATGCACTTGTGATGCATG CATATTTAGTATACGGCATTCCACAAAATAATATGAAAAGGATGTCCTTAATACTCAAGGCAGCATACAATGTTGGGGGTCATACAGTTAATGTAGACAT GATACAGAGTTATATTCTGGGATGTCGGCTTCTCCGTCCAGGACAGTGGCTGTGGCAGCTATTTTCTTCCAAGACAAAATTCAAGGTTGGAGATGGAAGG AAAGCTTATTCTATTGATCATCCTGAACCTCGCTTGTATTTTGCACTTTGTGCAGGAAGCTATTCTGATCCTGCGGTTCGAGTATATACTCCTAAGCGAG TGTTTGAGGATCTGGAGGCTGCAAAGGAAGAATACATCCAATCAACATTCATTGTACATAAAGAAAAGAAACTCCATATACCAAAGATTGTGGAGTCTTT TGCCAAGGATTTGGAACTTTGCCCTGCCGGTTTGATGGAAATGATAGAGCATTTACTGCCTCATTGTTTGCGGAAAAGAATTCAGGAGTGTCGGCACAGA AAACTTGGCAAGAACATCGAGTGGATTCCTCACAACTTCGCGTTTCGCTATCTGCTTTCCAAGGAATTAGCCTAG
AA sequence Show only first row Show all	>Potri.009G111100.7 pacid=42770889 polypeptide=Potri.009G111100.7.p locus=Potri.009G111100 ID=Potri.009G111100.7.v4.1 annot-version=v4.1 MHVVKCRAGSTFKQFKSMEVRVSRHKHSNSDPCQRKFDVAKQEPNSIFEDFCHLKSKKMGQLEDCVEVKKRQFPNTEVQNSLKQEILDLQDRLQDQVLVR RALEKALSSRSFSHDIMTDKSIPKPAKDLMKEIAVLELEVVYMERYLLSLYRKTFDQQASSLSTKDEREDERFKMSSDAHRGMFPAVPRNDIVSVKDNST DNASHLTSLTKECNGTWGLEKLLDSSIHRCHSSISQRSIGTSPPTRSIVRAIDSYHSLPLSMLEQAWNGTSNATSLADHLGTSIRYGVVETPNWLSEEMI RRISAIYCELADPPLINPDYASSRISVSSSPNEFPSQGHGDIWSPQYGNFSSFNSSIDNPFHIGASKEFSGPYCSMAKVQHICRDSQKLRDIQHKLQDFR SLVSQLEGVNPRKMKHEEKLAFWINVHNALVMHAYLVYGIPQNNMKRMSLILKAAYNVGGHTVNVDMIQSYILGCRLLRPGQWLWQLFSSKTKFKVGDGR KAYSIDHPEPRLYFALCAGSYSDPAVRVYTPKRVFEDLEAAKEEYIQSTFIVHKEKKLHIPKIVESFAKDLELCPAGLMEMIEHLLPHCLRKRIQECRHR KLGKNIEWIPHNFAFRYLLSKELA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	0	1
					Potri.004G050600 [exp]	3.87	0.9636
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	4.12	0.9708
AT1G31330		PSAF	photosystem I subunit F (.1)		Potri.003G148900 [exp]	6.63	0.9416
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	6.92	0.9599
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	9.94	0.9554
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	10.09	0.9613
					Potri.004G050700 [exp]	12.48	0.9433
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	12.96	0.9636
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	13.00	0.9549	2,Pt-LHCB2.1
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.002G180300 [exp]	13.26	0.9634

Compare expression of checked genes

Potri.009G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.