Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39830 92 / 5e-23 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT4G36860 92 / 1e-22 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT1G19270 91 / 1e-22 DA1 DA1 (.1) AT5G66630 74 / 1e-16 DAR5 DA1-related protein 5 (.1) AT5G66620 74 / 2e-16 DAR6 DA1-related protein 6 (.1) AT5G66610 73 / 3e-16 DAR7 DA1-related protein 7 (.1.2) AT5G17890 67 / 3e-14 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 59 / 2e-11 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124504 [exp] 238 / 3e-80 AT1G19270 182 / 3e-53 DA1 (.1) Potri.002G132700 [exp] 98 / 3e-25 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 94 / 1e-23 AT1G19270 654 / 0.0 DA1 (.1) Potri.010G197500 [exp] 93 / 3e-23 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.005G128900 [exp] 90 / 4e-22 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 89 / 6e-22 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 86 / 6e-21 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010033 [exp] 94 / 9e-24 AT1G19270 657 / 0.0 DA1 (.1) Lus10018789 [exp] 91 / 1e-22 AT1G19270 575 / 0.0 DA1 (.1) Lus10016298 [exp] 91 / 1e-22 AT1G19270 646 / 0.0 DA1 (.1) Lus10016791 [exp] 91 / 2e-22 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10022486 [exp] 91 / 2e-22 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10032736 [exp] 88 / 2e-21 AT1G19270 628 / 0.0 DA1 (.1) Lus10004690 [exp] 88 / 3e-21 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10040258 [exp] 87 / 4e-21 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 69 / 1e-15 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF12315 [poplar] [flax] DA1-like Protein DA1
Representative CDS sequence Show only first row Show all	>Potri.009G111446.1 pacid=42771271 polypeptide=Potri.009G111446.1.p locus=Potri.009G111446 ID=Potri.009G111446.1.v4.1 annot-version=v4.1 ATGACCGGAGGGATCTTAGCTCATGAGTTTATGCACGCATGGCTGAGGCTTCAAGGCGTGTCACGCTTGAACCCAGAAATCGAAGAAGGTATATGCCAGG TGATGGGTTACCAATGGCTGGATTGGTTCGAAGCGGTAGATCCAGAGGCATCGTCTAGCAGAAGTGAGAAGGCTCAGTTCATGAGGAACTTGAAGAAAAC TTTCAAGGGTGAAGTAGAAAACATGTTGGACGGAGCTTATGGTGATGGATTCAGAGATGCTCAATGGGCGGTCTCGAGATATGGCCTTGACCATGTCATC AGGCACATTATCCGCCATAAAACTCTTCCGAGAGAGTGA
AA sequence Show only first row Show all	>Potri.009G111446.1 pacid=42771271 polypeptide=Potri.009G111446.1.p locus=Potri.009G111446 ID=Potri.009G111446.1.v4.1 annot-version=v4.1 MTGGILAHEFMHAWLRLQGVSRLNPEIEEGICQVMGYQWLDWFEAVDPEASSSRSEKAQFMRNLKKTFKGEVENMLDGAYGDGFRDAQWAVSRYGLDHVI RHIIRHKTLPRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.009G111446 [exp]	0	1
					Potri.005G026425 [exp]	2.00	0.9823
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	3.46	0.9589
AT1G32583			unknown protein		Potri.010G246900 [exp]	4.00	0.9274
AT4G24700			unknown protein		Potri.012G086000 [exp]	4.24	0.9607
					Potri.005G073733 [exp]	4.47	0.9585
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.005G246100 [exp]	5.47	0.9579	Pt-PETE.1
					Potri.001G394900 [exp]	7.21	0.9340
AT5G63100			S-adenosyl-L-methionine-depend...		Potri.015G082432 [exp]	10.48	0.9376
					Potri.008G136566 [exp]	10.58	0.9313
					Potri.008G224228 [exp]	12.00	0.9379

Compare expression of checked genes

Potri.009G111446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.