Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34350 736 / 0 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124604 [exp] 929 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Potri.004G150400 [exp] 796 / 0 AT4G34350 682 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026322 [exp] 798 / 0 AT4G34350 760 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10040509 [exp] 787 / 0 AT4G34350 750 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10011310 [exp] 778 / 0 AT4G34350 743 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10042345 [exp] 749 / 0 AT4G34350 713 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1) Lus10009762 [exp] 128 / 4e-35 AT4G34350 124 / 6e-34 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02401 [poplar] [flax] LYTB LytB protein
Representative CDS sequence Show only first row Show all	>Potri.009G111569.1 pacid=42772249 polypeptide=Potri.009G111569.1.p locus=Potri.009G111569 ID=Potri.009G111569.1.v4.1 annot-version=v4.1 ATGGCTATCTCTCTCCAACTCTGCCGCGTATCACTCCGCTCCGACCTCTCCTCCGACAATCGCGTACCTATCCGCCGCCGTAGAACCACTTTCTCCGTCC GCTGCGCTGGCGGTGATGACTCTACTTCTTCAGTCTCTTTGGAATCGGAATTTGACGCCAAAGTCTTCAGACATAACCTGACAAGAAGCAAGAATTATAA TCGTAGAGGTTTTGGCCACAAAGAAGAGACACTTGAGCTCATGAATCGCGAGTACACCAGTGATATAATAAAGAAATTGAAGGAGAATGGTTATGAGTAT ACATGGGGAAATGTTACAGTCAAATTAGCCGAAGCTTATGGATTTTGCTGGGGAGTAGAGCGAGCTGTTCAGATTGCTTACGAAGCCAGAAAACAGTTTC CTGATGACAAGATTTGGATTACTAACGAGATTATCCACAATCCGACTGTTAATAAGCGGTTAGAGGAGATGGAAGTTGAAAACGTTCCTGTTGAGGAAGG GAAGAAACAGTTTGAAGTTGTAAATGGTGGTGATGTTGTGATTTTGCCTGCATTTGGAGCGGCAGTGGATGAGATGTTGACTTTGAGTAGCAAAAATGTA CAAATTGTTGATACAACTTGCCCTTGGGTATCCAAGGTTTGGACTACTGTTGAGAAGCACAAGAAGGGAGATTATACCTCAATTATTCATGGAAAATATG CTCATGAGGAAACTGTAGCAACCGCTTCTTTTGCAGGAAAGTACATTATTGTGAAGGATATGAAAGAGGCAATGTATGTGTGTGATTACATTCTTGGGGG TGAACTTAATGGATCTAGCTCAACCAGAGAGGAGTTTCTAGAGAAATTTAAAAATGCAGTTTCTAAGGGGTTTGATCCTGATAGTGACCTGGTGAAACTT GGTATTGCAAATCAAACTACAATGCTCAAGGGAGAAACAGAAGACATTGGAAAATTGGTGGAGAGGATCATGATGCGCAAGTATGGAGTGGAAAATGTAA ATGATCATTTCATAAGCTTCAACACCATTTGTGATGCTACTCAGGAGCGACAAGATGCAATGTATAAACTGGTGGAGGAAAAGTTGGATCTTATGTTAGT TGTTGGCGGGTGGAACTCAAGTAACACCTCCCACCTCCAAGAAATTGCTGAGCACCATGGAATTCCTTCATACTGGATTGACAGTGAACAGAGGATAGGC CCAGGAAACAAAATAGCTTATAAGTTGAACCATGGGGAGTTGGTTGAGAAAGAGAACTGGCTTCCACAAGGCCCTATTACAATTGGTGTGACATCAGGCG CCTCTACACCAGACAAGGTTGTCGAAGATGCCCTTATCAAGGTGTTCGACATCAAACGTGACGAAGCTTTACAAGTAGCTTAA
AA sequence Show only first row Show all	>Potri.009G111569.1 pacid=42772249 polypeptide=Potri.009G111569.1.p locus=Potri.009G111569 ID=Potri.009G111569.1.v4.1 annot-version=v4.1 MAISLQLCRVSLRSDLSSDNRVPIRRRRTTFSVRCAGGDDSTSSVSLESEFDAKVFRHNLTRSKNYNRRGFGHKEETLELMNREYTSDIIKKLKENGYEY TWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWITNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYVCDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKL GIANQTTMLKGETEDIGKLVERIMMRKYGVENVNDHFISFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHHGIPSYWIDSEQRIG PGNKIAYKLNHGELVEKENWLPQGPITIGVTSGASTPDKVVEDALIKVFDIKRDEALQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.009G111569 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G224900 [exp]	7.34	0.9635
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.014G102100 [exp]	14.00	0.9608
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	16.15	0.9489
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	19.49	0.9548
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	19.59	0.9493
AT1G54520			unknown protein		Potri.005G049500 [exp]	21.63	0.9518
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	23.95	0.9505
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	27.96	0.9358
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	28.63	0.9258	WRKY3.1
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	30.03	0.9487	NAP7.2

Compare expression of checked genes

Potri.009G111569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.