Plant FIBer expression Database

Potri.009G111692 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49380 778 / 0 cytochrome c biogenesis protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T124704
[exp]
1125 / 0 AT1G49380 776 / 0.0 cytochrome c biogenesis protein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011311
[exp]
773 / 0 AT1G49380 746 / 0.0 cytochrome c biogenesis protein family (.1)
Lus10040510
[exp]
627 / 0 AT1G49380 556 / 0.0 cytochrome c biogenesis protein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05140 ResB ResB-like family
Representative CDS sequence
>Potri.009G111692.1 pacid=42770797 polypeptide=Potri.009G111692.1.p locus=Potri.009G111692 ID=Potri.009G111692.1.v4.1 annot-version=v4.1
ATGGATATTCTGAACCCCACAAAACCCCTTAGCTCATCTCTATTCAACACCCATTTTCGCAAACCCACTCTTCTCCTTAACTCCAAAATTCTTAAGCTCA
AACCCCAAATTCACACTCTTTACAGCAACAACAACAAGAGAAGTAGACTTTCTGTAACCATTGTAACTTGTAGCAAGCTCAAAACATCTAAAGAGATCAA
GGACAAGGACAAGAACGCGTCCGGGAAGATTCTTCTATCGAATTCAGCTCCACCTGTTTTGTCAGAGGAGAGTGGTGGTGGTGGTGGTGGTAATGGAGAG
AAAGTTCCAGTGAAGACAGGAACTGGAGCATTGGGGTTCTTGAAGAGGTTGCCTAGAAAGGTTTTGGCTGTTTTGTCTAATTTGCCTTTGGCTATTGGAG
AGATGTTCTCTATTGCTGTGCTAATGGCTCTAGGTACTCTTATTGATCAAGGGGAGGCTCCAGAATTCTATTTCCAAAAGTTCCCAGAAGAGAATCCTTT
GTTAGGATTCTTCACTTGGAAGTGGGTTCTCACCCTCGGGTTCGATCACATGTATTCATCCCCTGTTTTCCTGGGAATGTTGGCTCTCTTAGGAGTATCT
CTTATGGCCTGCACTTACACCACACAGATCCCCCTGGCTAAGGTTGCGAGAAGGTGGAATTACTTACATTCTGCTGATGCTATTCGTAAACAGGAATTTT
CCGACAATTTGCCCAGGGCATCAGTTCAAGATTTGGGTGTTATTCTGATGGGATCTGGATATGAGGTATTCTTGAAAGGACCCTCTCTATATGCATTTAA
GGGGCTGGCCGGTCGGTTTTCCCCTATTGGAGTACATTTAGCTATGCTGCTGATAATGGCAGGAGCAACTCTTAGTGCCACTGGGAGCTTTAGAGGCTCA
GTTACAGTTCCACAAGGACTGAATTTTGTTGTAGGAGATGTACTGGGACCAAGTGGGTTTCTCTCAACTCCCACTGAAGCTTTCAATACCGAGGTTCATG
TCAACAGATTCTACATGGACTACTATGATGGTGGTGATATCAAACAATTTCACACTGACCTGTCACTATTTGACCTTAATGGGAAGGAGGTTATGAGGAA
AACAATTAGTGTAAATGATCCGTTACGTTATGGTGGAATCACTATGTACCAGACAGACTGGAGCATTTCCGCCTTGCAGGTACGCAAGGATGATGAAGGA
CCTTTCAATTTGGCTATGGCACCATTAAAAATCAGTGGAGACAATAAACTCTATGGAACCTTCTTACCAGTAGGGGATGTTAACTCTCCTAATGTCAAGG
GAATATCAATGCTTGCTCGTGATCTACAATCCATCGTCCTTTATGATCAAGAAGGGAAATTTGTTGGAGTGCGAAGACCCAACTCTAAGCTTCCGATTGA
CATAGATGGCATGAAAATTATTATTGAAGATGCAATTGGAAGCAGCGGTCTTGAATTAAAGACTGATCCGGGCGTGCCCGTTGTGTATGCTGGATTTGGT
GCTCTAATGCTCACAACTTGCCTGAGTTACTTATCTCATTCACAGATATGGGCTTTACAAGACGGAACAGCAGTGATTGTTGGAGGAAAGACTAACCGAG
CAAAAGCTGAATTTCAATATGAGATAAATTTTTTGCTCGATAAGGTTCCAGAGATAGTTGAATCATCTCTTTCAAAGCAATCTGATGTTGCAAGTGGCTA
G
AA sequence
>Potri.009G111692.1 pacid=42770797 polypeptide=Potri.009G111692.1.p locus=Potri.009G111692 ID=Potri.009G111692.1.v4.1 annot-version=v4.1
MDILNPTKPLSSSLFNTHFRKPTLLLNSKILKLKPQIHTLYSNNNKRSRLSVTIVTCSKLKTSKEIKDKDKNASGKILLSNSAPPVLSEESGGGGGGNGE
KVPVKTGTGALGFLKRLPRKVLAVLSNLPLAIGEMFSIAVLMALGTLIDQGEAPEFYFQKFPEENPLLGFFTWKWVLTLGFDHMYSSPVFLGMLALLGVS
LMACTYTTQIPLAKVARRWNYLHSADAIRKQEFSDNLPRASVQDLGVILMGSGYEVFLKGPSLYAFKGLAGRFSPIGVHLAMLLIMAGATLSATGSFRGS
VTVPQGLNFVVGDVLGPSGFLSTPTEAFNTEVHVNRFYMDYYDGGDIKQFHTDLSLFDLNGKEVMRKTISVNDPLRYGGITMYQTDWSISALQVRKDDEG
PFNLAMAPLKISGDNKLYGTFLPVGDVNSPNVKGISMLARDLQSIVLYDQEGKFVGVRRPNSKLPIDIDGMKIIIEDAIGSSGLELKTDPGVPVVYAGFG
ALMLTTCLSYLSHSQIWALQDGTAVIVGGKTNRAKAEFQYEINFLLDKVPEIVESSLSKQSDVASG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G49380 cytochrome c biogenesis protei... Potri.009G111692
[exp]
0 1
AT4G24090 unknown protein Potri.001G084500
[exp]
2.00 0.9839
AT3G20930 RNA-binding (RRM/RBD/RNP motif... Potri.008G022280
[exp]
5.29 0.9689
AT2G48070 RPH1 resistance to phytophthora 1 (... Potri.014G137300
[exp]
5.47 0.9738
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.013G075400
[exp]
6.00 0.9713
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Potri.010G022400
[exp]
6.92 0.9706
AT3G53920 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase ... Potri.006G234400
[exp]
7.07 0.9643
AT5G63420 Trihelix EMB2746 embryo defective 2746, RNA-met... Potri.012G095800
[exp]
7.48 0.9627
AT1G75380 ATBBD1 bifunctional nuclease in basal... Potri.005G230600
[exp]
8.48 0.9372
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.009G043200
[exp]
9.16 0.9629
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.014G050300
[exp]
9.21 0.9706

Potri.009G111692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.