Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13920 116 / 6e-28 GRF zinc finger / Zinc knuckle protein (.1) AT3G42860 87 / 2e-18 zinc knuckle (CCHC-type) family protein (.1) AT1G54930 71 / 3e-13 GRF zinc finger / Zinc knuckle protein (.1) AT5G63920 54 / 4e-07 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125604 [exp] 1040 / 0 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125504 [exp] 540 / 0 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1) Potri.001G318100 [exp] 81 / 2e-16 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1) Potri.009G094001 [exp] 50 / 5e-07 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1) Potri.005G067100 [exp] 48 / 2e-05 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030560 [exp] 81 / 3e-16 AT3G42860 258 / 1e-82 zinc knuckle (CCHC-type) family protein (.1) Lus10012906 [exp] 45 / 1e-08 AT3G42860 184 / 1e-54 zinc knuckle (CCHC-type) family protein (.1) Lus10004959 [exp] 51 / 3e-06 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1) Lus10014888 [exp] 44 / 5e-05 ND 39 / 7e-04 Lus10025368 [exp] 44 / 0.0001 AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1) Lus10012985 [exp] 42 / 0.0002 AT3G42860 41 / 5e-05 zinc knuckle (CCHC-type) family protein (.1) Lus10011629 [exp] 42 / 0.0002 ND 39 / 6e-04 Lus10020975 [exp] 41 / 0.0007 AT5G13920 42 / 5e-05 GRF zinc finger / Zinc knuckle protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0167 [poplar] [flax] Zn_Beta_Ribbon PF06839 [poplar] [flax] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G112676.1 pacid=42771113 polypeptide=Potri.009G112676.1.p locus=Potri.009G112676 ID=Potri.009G112676.1.v4.1 annot-version=v4.1 ATGGCGTGTGGGAGCCACGAGTGTCATGTTAGCGATCCAATTTCCTCAACTCCACCACAAGCATCACCCTCTGCTTCCCCATCTCCTCAAAGGAACCCTA AAGAGCATGATCAATGCTTTATGTGCAAAAGGCTTGGCCACTGGTCCAAAGATTGTCCCAACAAAACCCCCCGAAAATCACTGGCCTTAAGCCCTGGATC ATCCTCCTCGACTTCAGTGCAGGTTCCTGATCTTCCAGTGGTTCGATGCCCTTGTGGTGGGGGCACTTGTAGAGTTTCAACTTCGAACACCGTTAAAAAT CCTGGCAGAAAGTTCTATGCTTGCCCTGTTGATCAAAGAACATCGGGTAGTTGCGGATTCTTCAAATGGAGTGACGACATTGCTGCTAGATTTAAACCCC CTATGTGTCCATGTGGTGCCGGGTCATGCAGTTTAAATATCGTATCAAGTGGTCCAGACAGAGGCCGATGGTATTTTGCTTGCCGGATTAAGAAGAACCA TGGAGCTTGTAAATTTTTGCAGTGGGCAGATTCTGAAGGGAATAACATGCAGAATATGCAAGGAGATGAAAGCAAGGGATACCCTGCCCGTCGGTCCTTG TTGACTGTAAAAAATGAACTGTGCACGGAAGACAATAAGAGTTCTGATATTGAGTTGGAGTCAACAATGGTGAAGAGTGTTGATAATTATCCTATTTCAT CCATGGATCCACCTATCAGAAAAGATGAGGTCCTTGTTAGGGACCTGGTCATGCAGGACTCCGAGTCTTGCGAAATTGTGTCAGGGACAGCACTTGAAGT CCCACCACCAATACCCAAGCCTGAGATTCCTTGCCAAGAACCAGAGTTCTCTTTGCAAATTTCTAATGCAAGGGACACAAAAATTGAAGGCACTTCTCCT TTTGATCCTGTTATAGAAGATGTGGGTGATATTGAAGCCCTGGCTCTCTTAGCAGGCAGTTCATCAAATGATGATGAAAGTGATATACAGCAAGGTCCAT TTCTACAATCTCCTAGAGAGGATGCTGAGCATCCAAATGGTATTTTTCAGGAGCCTTCAGGGATGCAAACTGTGGTGGAGAACAGTGATACATCAAAGTT AGCCTTGAAAACGTTTGGGCAAGTTTTGCTCGACATTCTGCAGTCTATGGATCAGACTCAGCATGAAACAATGTTGAAGGTGGCAGAAAACACTTTTGAT TCTTTGCGCCATCTCTCAATTGACTATGCATCTTTTTCCAAGGCTGTGAGGGAATACATTGAATGCAAATCAAAACTGGCTGGAATTGAGGAGTCCATGG GCGCAGACTCTTCTTCAGAAGAATTCCTTGGCCATTACAATGATAAGAAAACCCAGTTTGACAACATCTCTCAGCGCCATGTGGAGGCAGTATCTGCTTA TGAAGCTTCCGAAAACCACCTCCAATCACTTCGCTTAGAAGTTACACGTGTCAAAAACATGCTTCTTCAACTGGAGAAACAATTGACTTACTGTGAGGCT GAGACTTTGAGGTGCAAGTCTTGTGTTACTGAAATTTCTAACCATAAGTCAGAATCAGAGAGAAGCTTGGATGCTGCATGTGAGAAAATGGAAGAAGCTT TGAAACTTGAAGACGAGAGGGATTCATTGGTATATGCAGCAAATGCAGCATTAGAGAATGCAAGGGTTCAGCTTCTTCAGTGA
AA sequence Show only first row Show all	>Potri.009G112676.1 pacid=42771113 polypeptide=Potri.009G112676.1.p locus=Potri.009G112676 ID=Potri.009G112676.1.v4.1 annot-version=v4.1 MACGSHECHVSDPISSTPPQASPSASPSPQRNPKEHDQCFMCKRLGHWSKDCPNKTPRKSLALSPGSSSSTSVQVPDLPVVRCPCGGGTCRVSTSNTVKN PGRKFYACPVDQRTSGSCGFFKWSDDIAARFKPPMCPCGAGSCSLNIVSSGPDRGRWYFACRIKKNHGACKFLQWADSEGNNMQNMQGDESKGYPARRSL LTVKNELCTEDNKSSDIELESTMVKSVDNYPISSMDPPIRKDEVLVRDLVMQDSESCEIVSGTALEVPPPIPKPEIPCQEPEFSLQISNARDTKIEGTSP FDPVIEDVGDIEALALLAGSSSNDDESDIQQGPFLQSPREDAEHPNGIFQEPSGMQTVVENSDTSKLALKTFGQVLLDILQSMDQTQHETMLKVAENTFD SLRHLSIDYASFSKAVREYIECKSKLAGIEESMGADSSSEEFLGHYNDKKTQFDNISQRHVEAVSAYEASENHLQSLRLEVTRVKNMLLQLEKQLTYCEA ETLRCKSCVTEISNHKSESERSLDAACEKMEEALKLEDERDSLVYAANAALENARVQLLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	0	1
AT3G11050		ATFER2	ferritin 2 (.1)		Potri.008G072700 [exp]	3.00	0.7941	PFE2.2
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038200 [exp]	3.46	0.8658
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	4.58	0.8551
					Potri.012G125200 [exp]	4.89	0.7703
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	5.29	0.8528
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G197200 [exp]	6.00	0.8015
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.003G053900 [exp]	8.36	0.7698
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	8.36	0.8151
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G015700 [exp]	9.53	0.8009
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	11.95	0.7731

Compare expression of checked genes

Potri.009G112676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.