Plant FIBer expression Database

Potri.009G112922 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T125804
[exp]
75 / 7e-20 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014330
[exp]
50 / 1e-08 AT5G66680 705 / 0.0 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1)
Lus10026039
[exp]
49 / 1e-08 AT5G66680 702 / 0.0 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1)
PFAM info
Representative CDS sequence
>Potri.009G112922.1 pacid=42772027 polypeptide=Potri.009G112922.1.p locus=Potri.009G112922 ID=Potri.009G112922.1.v4.1 annot-version=v4.1
ATGGCCATAAACCTTCTCCTTCGCCTAACTATCCTCCCCTTCTTCACCACGTCCTCCTCCCCCGACTCTCCAACCAACCGCCGCATTCTCATCTTACTCG
ACGACTTCGCACTCAACTCCCCACATCTCTTCTTCAACTCCCGCCAATCCCGCAACAACTTTAACCTTGACTTCAGACTCGCTGACGATCCCAAACTCTC
ACTCCAACGCTAA
AA sequence
>Potri.009G112922.1 pacid=42772027 polypeptide=Potri.009G112922.1.p locus=Potri.009G112922 ID=Potri.009G112922.1.v4.1 annot-version=v4.1
MAINLLLRLTILPFFTTSSSPDSPTNRRILILLDDFALNSPHLFFNSRQSRNNFNLDFRLADDPKLSLQR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G112922
[exp]
0 1
AT3G11040 AtENGase85B Endo-beta-N-acetyglucosaminida... Potri.008G073001
[exp]
1.00 0.9229
AT1G10390 Nucleoporin autopeptidase (.1.... Potri.011G148800
[exp]
1.73 0.8560
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.009G155400
[exp]
4.58 0.8400
AT4G20020 unknown protein Potri.004G218800
[exp]
4.69 0.8717
AT3G04160 unknown protein Potri.019G029400
[exp]
5.29 0.8528
AT1G18950 DDT domain superfamily (.1) Potri.015G067300
[exp]
5.65 0.8241
AT1G70620 cyclin-related (.1.2.3) Potri.010G046000
[exp]
11.61 0.8373
AT5G13010 EMB3011 embryo defective 3011, RNA hel... Potri.010G172500
[exp]
14.83 0.8194
AT2G47310 flowering time control protein... Potri.002G192900
[exp]
14.86 0.8237 FCA.3
AT3G19895 RING/U-box superfamily protein... Potri.008G085700
[exp]
15.09 0.8424

Potri.009G112922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.