Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36800 332 / 5e-118 RCE1 RUB1 conjugating enzyme 1 (.1.2) AT2G18600 317 / 4e-112 Ubiquitin-conjugating enzyme family protein (.1) AT3G08700 100 / 4e-27 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G08690 98 / 2e-26 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G53300 96 / 2e-25 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 96 / 2e-25 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT5G41700 95 / 3e-25 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 95 / 6e-25 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT2G16740 94 / 7e-25 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT1G64230 94 / 9e-25 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125904 [exp] 384 / 7e-139 AT4G36800 332 / 5e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.007G030900 [exp] 353 / 2e-126 AT4G36800 340 / 2e-121 RUB1 conjugating enzyme 1 (.1.2) Potri.005G126500 [exp] 337 / 3e-120 AT4G36800 332 / 3e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.014G041532 [exp] 142 / 4e-44 AT4G36800 137 / 5e-42 RUB1 conjugating enzyme 1 (.1.2) Potri.014G041466 [exp] 108 / 3e-31 AT2G18600 104 / 3e-30 Ubiquitin-conjugating enzyme family protein (.1) Potri.011G168200 [exp] 96 / 2e-25 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.004G175000 [exp] 96 / 2e-25 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G471200 [exp] 94 / 7e-25 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 94 / 1e-24 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026038 [exp] 338 / 1e-120 AT4G36800 341 / 1e-121 RUB1 conjugating enzyme 1 (.1.2) Lus10014329 [exp] 330 / 3e-116 AT4G36800 332 / 3e-117 RUB1 conjugating enzyme 1 (.1.2) Lus10010143 [exp] 258 / 6e-89 AT4G36800 257 / 1e-88 RUB1 conjugating enzyme 1 (.1.2) Lus10028700 [exp] 98 / 3e-26 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 98 / 3e-26 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10027846 [exp] 97 / 9e-26 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 94 / 9e-25 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10039323 [exp] 93 / 2e-24 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 93 / 2e-24 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 92 / 4e-24 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.009G113045.1 pacid=42770868 polypeptide=Potri.009G113045.1.p locus=Potri.009G113045 ID=Potri.009G113045.1.v4.1 annot-version=v4.1 ATGATCAAGCTGTTTAAAGTGAAGGAGAAACAAAGGGAACTTGCTGAAAACGCCAATGGAAAGTCACCTATCAAGAAACAAAGTGCAGGAGAATTACGTC TTCATAAAGATATCAGTGAACTGAACTTGCATAAAACTTGTACAATGGCTTTCCCGAATGGCAAGGATGACTTGATGAAATTTGAGGTTACCATTCGTCC TGATGAAGGATATTATCGAGGTGGCACTTTTGTGTTCTCGTTCCAAATTTCATCCATCTATCCTCATGAAGCACCAAAAGTCAAGTGCAAGACAAAGGTT TATCATCCTAATATAGACCTGGAAGGAAATGTTTGCCTCAATATTTTACGAGAAGACTGGAAACCTGTTCTGAATATTAATACAATAATCTATGGACTCT TTCATCTTTTCACGGAACCTAATCATGAGGATCCCCTCAATCAAGATGCCGCAGCTGTCTTAAGAGATAACCCAAAATTGTTTGAATCCAACGTGAGAAG GGCAATGACTGGTGGATATATGGGACAAACCTTCTTCCCTCGCTGTATCTAG
AA sequence Show only first row Show all	>Potri.009G113045.1 pacid=42770868 polypeptide=Potri.009G113045.1.p locus=Potri.009G113045 ID=Potri.009G113045.1.v4.1 annot-version=v4.1 MIKLFKVKEKQRELAENANGKSPIKKQSAGELRLHKDISELNLHKTCTMAFPNGKDDLMKFEVTIRPDEGYYRGGTFVFSFQISSIYPHEAPKVKCKTKV YHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTEPNHEDPLNQDAAAVLRDNPKLFESNVRRAMTGGYMGQTFFPRCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.009G113045 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	2.82	0.8424
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147500 [exp]	4.89	0.8289
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	10.81	0.8287
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	12.24	0.8585
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.013G040700 [exp]	12.80	0.7961	BZO2.2
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	16.00	0.8169
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	21.72	0.7890
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	22.04	0.8057
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	24.37	0.8578	CLV1.2
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	27.01	0.8350	Pt-SYNC2.1

Compare expression of checked genes

Potri.009G113045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.