Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19360 656 / 0 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 629 / 0 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 534 / 0 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 75 / 4e-14 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 66 / 3e-11 XEG113 xyloglucanase 113 (.1) AT4G01750 50 / 1e-06 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G01770 49 / 4e-06 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT4G19970 49 / 9e-06 unknown protein AT4G01220 45 / 6e-05 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT1G56550 43 / 0.0003 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042700 [exp] 676 / 0 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 652 / 0 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 73 / 2e-13 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 60 / 2e-09 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.002G166000 [exp] 44 / 0.0001 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026327 [exp] 715 / 0 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 710 / 0 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 653 / 0 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 639 / 0 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 70 / 6e-13 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 65 / 7e-11 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10027804 [exp] 62 / 5e-10 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10005034 [exp] 62 / 7e-10 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10041976 [exp] 49 / 7e-06 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 48 / 8e-06 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.009G113300.1 pacid=42772340 polypeptide=Potri.009G113300.1.p locus=Potri.009G113300 ID=Potri.009G113300.1.v4.1 annot-version=v4.1 ATGATTGGACGCAGAGATGGAGCGTTGATGCGAAACAACAGCAGCAATCAATCACTACTTAAATCAAGAATTGCAATTGCAATTGCCATTGGGATGTTCC TTGGATGCATCTTCGCTTTCTTCTTCCCTCATGGACTTTTCTCTTCCAATTCTCCTCACTTTGACCATAACCACCTCACAAGATCCATTTCCCAGGTGGT ATCAACATCATGTGAATCATCTGATAGTCTGAACATGTTAAAAGCTGAGTTTGTGGCTGCATCGGAGAAAAATGCTGAGTTGAAAAAACAGGTTAATGTG TTGATTGAAAAGCTTAGATTGGCTGAACAAGGTAAAGATCATGCAGAGAAGCAAGTGTTGGTGTTGGGTGAACCGCATAAAGCTGGCCCTTTTGGTACTG TTCAGGGTTTAAGGACAAATCCGACAGTCGTTCCAGATGATTCTGTGAACCCGAGACTAGCAAATATTTTAGAGAAAATTGCTGTTGGGAAGGAACTTAT AGTTGCTTTGGCGAATTCAAATGTAAAGGACATGTTGGAGGTTTGGTTTAAAAGCATCCAGAAAGTAGGGATACCCAACTATTTGGTTGTTGCTTTGGAT GATGAGATTGCCAAGTTTTGTGAATCAAATGATGTTCCAGTGTATAAGAGAGACCCAGACAAGGGAATTGATTCTGTAGGAAAGACTGGAGGCAACCATG CTGTTTCAGGACTGAAATTTCATATATTGAGGGAATTTTTGCAGCTCGGATACAGTGTTCTTCTCTCAGATGTTGATATTGTGTATTTGCAAAATCCTTT CCATTATCTTTATAGAGATTCAGATGTGGAATCCATGAGTGATGGCCACAATAATATGACAGCTTATGGTTATAATGATGTTTTCGATGAACCTGCAATG GGTTGGGCTAGATATGCCCATACAATGCGGATATGGGTTTACAACTCTGGCTTTTTCTACATTAGACCGACAATTCCTTCAATCGAGCTCTTGGATCGAG TCGCTAATCGGCTCTCTCGTGGGAATGCTTGGGACCAGGCAGTTTTCAACGAGGAACTCTTTTTCCCTTCACATCCTGGGTATGATGGACTTTATGCATC CAGGAGAACTATGGATTTCTATCTCTTCATGAACAGCAAGGTCCTCTTCAAAACTGTGAGGAAAAATGCTAACTTGAGAAAGATCAAGCCAGTGATTGTG CATATAAATTACCATCCTGATAAGCTTCCGCGTATGCAAGCGGTGGTGGAATTCTATGTCAATGGCAAGCAAGATGCACTAAGCTCTTTCCCTGATGGAT CAGAATGA
AA sequence Show only first row Show all	>Potri.009G113300.1 pacid=42772340 polypeptide=Potri.009G113300.1.p locus=Potri.009G113300 ID=Potri.009G113300.1.v4.1 annot-version=v4.1 MIGRRDGALMRNNSSNQSLLKSRIAIAIAIGMFLGCIFAFFFPHGLFSSNSPHFDHNHLTRSISQVVSTSCESSDSLNMLKAEFVAASEKNAELKKQVNV LIEKLRLAEQGKDHAEKQVLVLGEPHKAGPFGTVQGLRTNPTVVPDDSVNPRLANILEKIAVGKELIVALANSNVKDMLEVWFKSIQKVGIPNYLVVALD DEIAKFCESNDVPVYKRDPDKGIDSVGKTGGNHAVSGLKFHILREFLQLGYSVLLSDVDIVYLQNPFHYLYRDSDVESMSDGHNNMTAYGYNDVFDEPAM GWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVANRLSRGNAWDQAVFNEELFFPSHPGYDGLYASRRTMDFYLFMNSKVLFKTVRKNANLRKIKPVIV HINYHPDKLPRMQAVVEFYVNGKQDALSSFPDGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.009G113300 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Potri.008G007500 [exp]	2.00	0.9219	Pt-MAN1.1
AT1G34350			unknown protein		Potri.013G114800 [exp]	9.48	0.9139
AT1G15760			Sterile alpha motif (SAM) doma...		Potri.001G204600 [exp]	12.00	0.8823
AT1G51160			SNARE-like superfamily protein...		Potri.017G149900 [exp]	12.64	0.9153
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	15.93	0.9191
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	19.36	0.9171
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	20.00	0.9050
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Potri.002G198300 [exp]	24.65	0.9068
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	25.13	0.9110
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	27.62	0.9113

Compare expression of checked genes

Potri.009G113300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.