Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18840 771 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G13600 381 / 5e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 353 / 5e-111 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 325 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 318 / 4e-98 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 313 / 3e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 308 / 1e-94 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 307 / 3e-94 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 310 / 6e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 303 / 3e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151500 [exp] 1205 / 0 AT3G18840 773 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G152000 [exp] 1202 / 0 AT3G18840 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G136200 [exp] 368 / 3e-117 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 351 / 2e-110 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 341 / 7e-106 AT3G22690 570 / 0.0 unknown protein Potri.007G104700 [exp] 327 / 9e-102 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 320 / 2e-99 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G075200 [exp] 317 / 1e-98 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 317 / 1e-98 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001445 [exp] 507 / 6e-175 AT3G18840 458 / 5e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016425 [exp] 364 / 3e-115 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 340 / 2e-107 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 341 / 9e-107 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000213 [exp] 337 / 4e-106 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 348 / 1e-105 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 342 / 2e-103 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019731 [exp] 324 / 1e-100 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 319 / 1e-98 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 319 / 3e-98 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G113500.1 pacid=42771233 polypeptide=Potri.009G113500.1.p locus=Potri.009G113500 ID=Potri.009G113500.1.v4.1 annot-version=v4.1 ATGAGGTCCTTAAGAGTTGGACTAATACACCATGTCCGATCCATAAAGTCCGGTTTTACATTACCAATATTAACCTCTAATCAACTCATTCACTTATACT CCAAACACTGCCTGATAAATGAAGCCCAGAAACTGTTCGATGAAATGCCTCGTAGAAATATTTACTCTTGGAACACAATAATATCTGCCCACGTAAAATC CCAAAACTTAGCACAAGCAAAATCCATTTTTGATTCCGCTTCTGTTAGGGATTTGGTCACTTATAATTCTATGTTATCTGGTTATGCTGACGTGGATGGA TATGAAAGAAATGCCCTTGAATTGTTTGTTGAAATGCACAGCAAGAGTAATGATATTGGTGTTGATGATTTTACTGTTACGAGTATGGTCAAACTGTTTG CTAAGTTATCTAATTTGTGTTATGGGAGGCAATTGCATTCATATATGGTGAAAACTGGTAACGATAGAAGCGGGTTTGTTGTGAGTTCTTTGATTGACAT GTATTCGAAATGTGGGTGTTATAAAGAGGCCTGCGGTATCTTTAGAGGGAGTGAAAAAGAAGGGGGTATTGATTTGGTTTCAAAGAATGCGATGGTGGCA GCATGTTGTAGAGAAGGGGAAATGGAGATGGCTTTGGGGTTGTTTTGGAGGGAAAATGAGTTGAACGATTCGGTTTCGTGGAATACATTGATTTCTGGTT ATGTTCAAAATGGTTATCCACTGGAGGCATTGAAGTTGTTTGTTTGTATGGGGGAGAATGGTGTTAAATGGAATGAGCATACTTTTGGTAGTGTTTTGAG TGCTTGTGCTGATTTAAGGAACTTGAAGATTGGTAAGGAAATGCATGCTTGGATTTTGAAGAATGGATTGAGTTCGAGTGCTTTTGTAGAAAGTGGCATT GTTGATGTTTATTGCAAGGGTGGGAATATGAAGTATGCAGAGTCATTCCATTTGACAAGCGGGACTGGAAGTTCCTTCTCCATCACTTCAATGATTGTGG GGTATTCTTCACAAGGAAACATGGTGGAAGCTTGTAGGCTTTTTGATTCGTTGGAAGAGAAGAATTCTATCGTTTGGGCTGCATTATTTGGTGGTTATGT CAAATTGAATCAATGTGAAGCTATTTTTGAACTTCTATGCTTGTATATAGCCAAGGAAGCTGCAATTCCTGATGCTTTGATCCTTGTCAGTGCACTTAGT GTGTGTGCATTCCAAGCTGCGCTTGGTCCTGGGAAGCAAATTCATGGTTATGTATACAGAATGGGGATTGAAATGGACATCAAGATGACTACTGCTATGA TTGATATGTACTCAAAATGTGGAAGTATACCATATGCAGAAAAAATGTTCCTGAAAGTTATTGAAAGAGATTTAGTCCTTTACAATGTAATGGTAGCCGG TTATGCTCATCATGGGTATGAGATTAAAGCTATAAATCTGTTTCAGGAAATGTTGGAGAGAGGAGTTGGACCAGATGCTATTACCTTTGTTGCCCTCCTG TCAGCTTGCCGTCACCGTGGGTTGGTAGATTTGGGTGAAAGAACTTTTTATTCCATGACAGAAGATTATCTCATACTGCCTGAAACTGATCACTATGCAT GCATGATTGATCTTTATGGAAGGGCTAGCCAGCTAGAAAAGATGGTCCTATTCATGCAAAGAATCCCTATAGAATATCAAGATGCTGCTGTCGCTGGGGC ATTTTTTAATGCATGTAGGCTAAATAAGAACACAGAATTAGCAAGAGAGGCAGAGGAGAAACTGTTAAAGATTGAAGGTGATAGTGGAGCTCGCTATGTG CAGTTGGCTAATGCTTATGCAGCGGAAGGGAACTGGGCTGAGATGGGTAGGATTAGGAAGGAGATGAGAGGAAAGGAGGCCAAGAAGTTTGCTGGTTGTA GTTGGGTATACTTGGATAATGGAGTCCATACATTTATATCCGGTGACAGAACTCATTCAAAAGCAGTGTGTATCTATTCAATGTTGGACTTCTTGACATC AGAACTTTATGAAATCGCTGGAGTATTCTGTTAG
AA sequence Show only first row Show all	>Potri.009G113500.1 pacid=42771233 polypeptide=Potri.009G113500.1.p locus=Potri.009G113500 ID=Potri.009G113500.1.v4.1 annot-version=v4.1 MRSLRVGLIHHVRSIKSGFTLPILTSNQLIHLYSKHCLINEAQKLFDEMPRRNIYSWNTIISAHVKSQNLAQAKSIFDSASVRDLVTYNSMLSGYADVDG YERNALELFVEMHSKSNDIGVDDFTVTSMVKLFAKLSNLCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCYKEACGIFRGSEKEGGIDLVSKNAMVA ACCREGEMEMALGLFWRENELNDSVSWNTLISGYVQNGYPLEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLSSSAFVESGI VDVYCKGGNMKYAESFHLTSGTGSSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFGGYVKLNQCEAIFELLCLYIAKEAAIPDALILVSALS VCAFQAALGPGKQIHGYVYRMGIEMDIKMTTAMIDMYSKCGSIPYAEKMFLKVIERDLVLYNVMVAGYAHHGYEIKAINLFQEMLERGVGPDAITFVALL SACRHRGLVDLGERTFYSMTEDYLILPETDHYACMIDLYGRASQLEKMVLFMQRIPIEYQDAAVAGAFFNACRLNKNTELAREAEEKLLKIEGDSGARYV QLANAYAAEGNWAEMGRIRKEMRGKEAKKFAGCSWVYLDNGVHTFISGDRTHSKAVCIYSMLDFLTSELYEIAGVFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	1.41	0.9418
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.001G100600 [exp]	2.23	0.9250
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	2.44	0.9415
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	2.44	0.9273
AT1G06710			Tetratricopeptide repeat (TPR)...		Potri.007G123600 [exp]	3.46	0.9155
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	4.00	0.9265
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	4.47	0.9108
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	4.58	0.9147
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063300 [exp]	5.65	0.9077
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	6.00	0.9101

Compare expression of checked genes

Potri.009G113500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.