Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SORT2.2,PtrPLT
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 717 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 657 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 646 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 575 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 544 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 464 / 2e-159 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 211 / 8e-62 ATINT1 inositol transporter 1 (.1) AT1G50310 204 / 3e-59 ATSTP9 sugar transporter 9 (.1) AT5G59250 203 / 3e-58 Major facilitator superfamily protein (.1) AT1G11260 200 / 1e-57 ATSTP1, STP1 sugar transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152300 [exp] 902 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 853 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 576 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 473 / 2e-163 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 472 / 1e-162 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 460 / 8e-158 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 223 / 2e-66 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 223 / 3e-66 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.001G253800 [exp] 201 / 8e-58 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042339 [exp] 807 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 799 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 797 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 745 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 706 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 702 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 662 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 606 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 570 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026032 [exp] 564 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.009G113600.1 pacid=42771597 polypeptide=Potri.009G113600.1.p locus=Potri.009G113600 ID=Potri.009G113600.1.v4.1 annot-version=v4.1 ATGGCTACAGGTCAAAACACAGAAGGGGATGCCAATCCCAGCCAACCCGCATTAGATAGAACACTTGCAGATTTTGATCCTGTGAAGAAACCAAAACGAA ACAAATTTGCTTTTGCTTGTGCAATCTTAGCTTCCATGACTTCAGTCTTGCTTGGTTATGATATCGGAGTAATGAGTGGAGCCAACATCTACATCCAAGA TGACCTTAAAATCAGTGACTTGCAAGTAGCATTGCTTGTGGGAACTCTTAACTTATACTCTCTTGTTGGCTCAGCCGCTGCTGGCCGGACCTCTGATCGG ATTGGTCGTCGATACACAATTGTGATGGCCGGAGCCATTTTCTTTCTTGGATCTATACTCATGGGATTTGCCACAAATTATGCCTTCCTCATGGTTGGTC GCTTTGTCGCCGGTGTCGGTGTCGGTTATGCCCTCATGATTGCCCCTGTTTACACTGCTGAAGTCTCTCCAGCCTCTTCCCGTGGATTTCTCACCTCATT CCCGGAAGTATTCATAAATGCTGGGATCTTACTAGGATATGTATCCAATTATGCCTTCTCTAAGCTCCCAACTAACTTGGGTTGGCGATTCATGCTTGGA ATTGGAGCAATTCCTTCAGTTTTCTTAGCTTTGGTTGTTTTAGGCATGCCCGAGTCTCCACGTTGGCTAGTCATGCAAGGTCGCCTTGGTGAAGCTAGGA AAGTTCTTGACAAAACTTCTGATTCTAAAGAAGAATCTCAACAAAGATTATCAGACATAAAAGAAGCTGCCGGGATCCCTCAAGATTGCAACGATGATAT TGTCCATGTGCAAAAACAGAGTCATGGTGAAGGTGTTTGGAAAGAATTACTCATTTATCCCACACCTGCTGTTCGTCACATTTTGATTTGTGGGATCGGT ATTCATTTCTTCCAACAAGCTTCAGGAATAGACGCGGTCGTTTTGTACAGTCCGAGGATCTTCGAAAAGGCTGGAATCACGTCATCCAATGATAAATTAC TAGCAACTGTAGCCGTTGGATTCACCAAGACCGTTTTCATCCTCGTGGCCACATTCTTACTTGATAGGATCGGACGACGCCCATTGCTTTTAAGTAGTGT TGGGGGTATGGTATTATCCCTAGCAACCCTTGGATTCGGGCTGACAATGATTGATCATTCAGATGAGAAACTGCCATGGGCTGTTGCATTATCAATTGCC ATGGTATTAGCTTATGTTTCATTCTTCTCCATAGGAATGGGACCGATAACTTGGGTATATAGCTCGGAGATTTTCCCCTTAAAACTACGTGCTCAGGGTA CAAGTATGGGAGTGGCGGTTAATAGAGTGACAAGCGGGGTGATATCTACAACTTTTATTTTGCTGTACAAGGCTATAACTATCGGTGGATCCTTTTTCCT TTTCGCTGGAGTTGCAGCCGTGGGTTGGCTGTTCTTTTATGCATGTTTGCCTGAGACACGAGGTAGAACTTTAGAGGATATGGAAGTGCTCTTTGGTAGT TTTTTCAAGTGGAGGTCTGCTTTAAAGGATGAGCAGAGGAAGGAAGTCAGTAGTGGTGAAAATGGCGGTCAGATTCAGATGGGAACTAAAGCTCAAGAAT AG
AA sequence Show only first row Show all	>Potri.009G113600.1 pacid=42771597 polypeptide=Potri.009G113600.1.p locus=Potri.009G113600 ID=Potri.009G113600.1.v4.1 annot-version=v4.1 MATGQNTEGDANPSQPALDRTLADFDPVKKPKRNKFAFACAILASMTSVLLGYDIGVMSGANIYIQDDLKISDLQVALLVGTLNLYSLVGSAAAGRTSDR IGRRYTIVMAGAIFFLGSILMGFATNYAFLMVGRFVAGVGVGYALMIAPVYTAEVSPASSRGFLTSFPEVFINAGILLGYVSNYAFSKLPTNLGWRFMLG IGAIPSVFLALVVLGMPESPRWLVMQGRLGEARKVLDKTSDSKEESQQRLSDIKEAAGIPQDCNDDIVHVQKQSHGEGVWKELLIYPTPAVRHILICGIG IHFFQQASGIDAVVLYSPRIFEKAGITSSNDKLLATVAVGFTKTVFILVATFLLDRIGRRPLLLSSVGGMVLSLATLGFGLTMIDHSDEKLPWAVALSIA MVLAYVSFFSIGMGPITWVYSSEIFPLKLRAQGTSMGVAVNRVTSGVISTTFILLYKAITIGGSFFLFAGVAAVGWLFFYACLPETRGRTLEDMEVLFGS FFKWRSALKDEQRKEVSSGENGGQIQMGTKAQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.009G113600 [exp]	0	1	Pt-SORT2.2,PtrPLT
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	6.00	0.9044
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.010G041100 [exp]	6.00	0.8866
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007300 [exp]	8.48	0.8930
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G011800 [exp]	9.48	0.8910
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.001G214700 [exp]	14.14	0.9041
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	16.06	0.8943
					Potri.004G140000 [exp]	18.33	0.8882
AT5G36160			Tyrosine transaminase family p...		Potri.017G013800 [exp]	21.63	0.8909
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	24.24	0.8813
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Potri.009G010700 [exp]	31.24	0.8788	CNGC15.1

Compare expression of checked genes

Potri.009G113600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.