Pt-ALPHA.12 (Potri.009G113700) [POPLAR]

| External link |
|
|||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Symbol | Pt-ALPHA.12 | |||||||||||||||||||||||||||||||||||||||||||||
|
Arabidopsis homologues
|
| |||||||||||||||||||||||||||||||||||||||||||||
|
Paralogs
|
|
|||||||||||||||||||||||||||||||||||||||||||||
|
Flax homologues |
|
|||||||||||||||||||||||||||||||||||||||||||||
| PFAM info |
| |||||||||||||||||||||||||||||||||||||||||||||
|
Representative CDS sequence |
>Potri.009G113700.1 pacid=42771341 polypeptide=Potri.009G113700.1.p locus=Potri.009G113700 ID=Potri.009G113700.1.v4.1 annot-version=v4.1
ATGGAGTCATTAATAGAGCTCTGTGATCTAATCTCACAAAATCCTGCACAATTCGCTGATAAATTGACCTGGCTATGCAATCGCTGTCCTCAACCAGAGT
CTCTCTTAACCGGATCGCCCAGGGTTTCTCACTCACAAATCAATGCAATCCTCGCAGTTTCTCGATTTCTCTCCATAACCCTCGACCACACCGATAACCG
TCCAAAATCACTAATCCTCGCTTTCTTCCGCTCAATCCCGACGTCGTTTAATCCTTCCTTTTGGCCACAATCCTTCTCTACCGACTCGATCGCGTCTTTT
TTTACCGGCTTCCTGGCTTACGTGTCAAAGTCGGCCGAATTGGATCCGGGTTTCTCCGAGGATGTTGCCGGATTTGTTGGAGAAGTTGTTATGGCTGCGA
TTGGGAACAATGCCGGTGAAAATTTGGCGAGCTCGGCGATTTCTAGGGTTTTTTTAATTGCGTTAACAGAGAATTTTGTTCCGATTTTGCCGGAAGATGG
GGAGAAGTTGATCACGTGCCTTTTAGATCAGTTTAATGTGCCCGTGCCGGTGCCATCGTCACCTAGTGAGCGAATTGGGATGAACTCTGGAACATCATCC
TCACAAAGTTCGCCATTGAGTAATAATGTGAAACAACATAATAGTAGCCACGATGCCAGTAATGATATTTCGAGTACGGTGAATGATTTGAGTCATATGA
CACTGTCTTCGTCGAGTGCATCAACTACAGTGGTGGTGAATGGGAGTGGAGTGACGTGGAAGAGTGGTTTGGAGTCAACAGGGGTGGGATTTGATGGAGG
TGGGGGATTGAGCAGGCAACAAGTGGCTTCATTTGAGGAAGAGACTGCGGAGGGATTGGAGAAGCAAGAGATTGCGTACAAGTTGATTGGACATGTTTTG
GATTGTGTCAAGATAGATAACAAGCTTTTGGAGCTAGTTAGGTTCATTGCTAAGAAGCAACTTCAATCTCTGTCTGCATTTTTGAAGATACGGAGACGGG
ACTGTAATGAACAGGGACAGCTTTTAAAAGCAAGAGTCAATGCAAAACTTTCCGTCTATCAAGCTGCAGCCAGGATGAAAGTTCAGAGTCTTGCATCTCT
TGATGTGGATGGCAAGACATCCAAGAGGTTGGTGCTTGAGACTCTGGCATTGTTGATAGATGCTGCAGAAGCCTGTTTGCTCTCAGTGTGGCGGAAGTTG
AAAAACTGTGAAGAGCTGCTCAGTTCATTGCTTGGTGGGATTGCACAAATTGCTGTCACCAGGGGGGGTCAGCCAATGCGTGTCTTGCTCATTCGCCTGA
AGCCACTTGTGCTGACTGCCTGTGCTCAGGCTGATACTTGGGGTGGCAGTCAGGGAGCAATGTTTGAGACTGTCATGAAGACAAGCTGTCAGATAATTGA
ATCTGGCTGGACAAGGGATCGGGCTCCTGTGGACACGTTTATCTCTGGATTGGCCTCCAGTATACGCGAACGAATTGATTATGATGACCAGGTTGACAAG
GAGAAGCAGGGAGTTCCTGCTGTGCAGCTTAATGTTATTCGCTTGCTTGCTGATTTGACTGTCGCTGTTAACAAGTCTGAAGTGGTAGACATGATATTGC
CACTTTTTATTGAAAGCTTGGAAGAGGGGGAAGCTTCAACTCCTGGTTTATTGCGACTTCGACTTCTCGATGCTGTTTCTCGCATTGCAGGTTTAGGTTT
TGAGAAGTCGTATCGGGAGACAGTTGTTCTAATGACAAGAAGTTACTTAAGTAAATTGTCAAGTGTAGGGTCTGCTGAAAGCAAAACATTGGCACCAGAA
GCCACCACAGAACGTGTTGAGACTCTTCCTGCAGGATTTCTTTTGATCGCTAGTGGGCTTAAAAATATGAAATTACGCTCAGACTATCGTCATCGTTTGC
TATCTCTGTGCTCAGATGTAGGCCTGGCTGCTGAATCCAAAAGTGGAAGGAGTGGAGCAGATTTTCTAGGGCCTCTGCTTTCTGCTGTTGCTGAAATATG
CTCTGATTTTGACCCCACTGTGAATGTGGAACCATCACTCTTGAAATTGTTCCGCAACCTGTGGTTCTATGTTGCTCTTTTTGGTCTAGCACCTCCCATT
CAGAAAATTCAGCAGCCAACAAAGTCAGTTTCAACTACACTGAACAGTGTGGGAAGCATGGGCACAATTGCTCTTCAAGCGGTGGGTGGACCATACATGT
GGAATGCACAGTGGTCGTCTGCTGTTCAGCGAATTGCTCAAGGGACTCCTCCCCTTGTTGTTAGCTCAGTGAAATGGCTTGAAGATGAATTGGAACTCAA
TGCCCTTCACAATCCTGGCAGTCGTCGGGGGAGTGGTAATGAGAAAGCAGCTTTAACACAAAGATCTGCTCTTTCAGCTGCTCTTGGTGGCAGAGTTGAT
GTTGCAGCTATGAGCACAATTTCAGGTGTGAAGGCAACCTATCTGCTTGCTGTTGCATTTTTGGAGATAATACGTTTCAGTAGCAATGGTGGCATCCTTA
ATGGTGGTGATAGTTTGAGTGCTTCTAGAAGTGCCTTCAGCTGTGTCTTCGAATATCTAAAAACTCCAAATCTTATGCCAGCTGTGTTCCAATGTTTGAT
GGCTATTGTTCATAGGGCATTTGAAGCAGCAGTTTTCTGGCTGGAAGATCGAATAACTGAAACAGGCAATGAAGCCAATGTTAGAGAATCAACTCTTTTT
TCCCATGCCTGTTTTCTTATAAAAAGCATGTCACAGAGGGAGGAACACATTCGAGATATTTCTGTAAACTTGTTGACTCAGCTAAGAGACAAGTTTCCTC
AGGTTTTGTGGAATTCATCCTGTTTAGACTCCCTGCTATTTTCAGTTCACAATGACTCACCTTCTGCAGTTATTAATGATCCTGCTTTGATAGCATCGGT
TCGTTCTTTGTACCAAAGGATTGTCAGGGAATGGATCAGCATATCACTTTCATATGCCCCATGCACTAGCCAAGGTCTACTGCAGGAAAAGCTTTGCAAA
GCAAATACTTGGCAGAGAACACAACCTACAACTGACGTTGTTTCTCTCTTAACTGAGATACGGATTGGGCCCAGTAAAAATGACTGGACTGGCATACGAA
CAGCTAATATTCCTGCAGTCATGGCTGCAGCAGCAGCTGCTTCAGGAGCAAACTTGAACGTGACTGAAGCTTTCAATTTGGAGGTGCTTAGCACTGGTAT
TGTGAGTGCAACGGTTAAGTGCAACCATGCTGGAGAAATTGCAGGCATGAGAAGGTTGTATAACAGCATTGGTGGATTTCAATCTGGTGGCGCACCAACA
GGTTTTGGTAGTGGTCTTCAAAGGTTGATAACTGGAGCGTTTTCTCAACAACCACCAGCTGAGGATGATTCATTTAATGAGATGCTACTTAATAAGATTG
TGCTCCTTCTTCAGCAATTTGTCAGTATTGCAGAGAAAGGTGGGGAAGTGGACAAGTCACAGTTTCGTGATACATGTTCCCAGGCTGCTGCATTTCTTCT
CTCAAATCTGGCTTCTGAGTCAAAATCAAATGTAGAAGGCTTTGCTCAACTTCTGCGTCTTCTTTGCTGGTGTCCAGCATATATTTCTACACCTGATTCG
ATGGAGACTGGTGTTTTCATTTGGACTTGGTTGGTTTCCGCTGCACCGCAACTTGGTTCTCTTGTGCTTGCAGAGCTAGTGGATGCTTGGTTATGGACAA
TTGATACGAAACGAGGTCTTTTTGCACATGAAGTGAAGTACTCTGGACCTGCTGCGAAACTGAGACCTCAGCTAGCCCCTGGGGAACCTGAATCGCTGCC
TGAAATTGATCCTGTTGAACAAATAATGGCGCATAAAATATGGGTTGGATTTTTAATTGACCGTTTTGAGGTAGTTCGACACAACAGTGTTGAGCAACTC
TTGCTTCTTGGCCGACTGTTACAAGGGACAACCAAATCTTCCTGGAACTTTTCCCGCCATCCTGCAGCTACTGGCACTTTCTTCACCATCATGCTTCTTG
GTCTTAAGTTCTGTTCATGTCATTCCCAAGGCAATCTGCAGAATTTCAAAACAGGGCTTCAACTACTGGAAGATCGTATTTATAGGGCCTGTTTGGGTTG
GTTTGCTTTTGAGCCTGAATGGTTTGATGTAAACAATGTAAATTTTTCCATTAGTGAGGCTCGATCTCTCTCCGTATTTGTTCACTATATTTCTAATGAT
GGTCAATCTGATGCAAGAGGACGGGGGCACGAGAATGGGACCTATTTGGTTGATATGAATGATCAGTGTCACCCTGTATGGGGCCAGATGGAGAACTATG
CTGCAGGAAGAGAAAAACGGAAGCAGCTGCTTATGATGCTATGCCAGCATGAAGCTGATAGGCTTGAAGTTTGGGCACAACCCACTAACTCTAAGGAAAA
TACATCTCGGCCTAAAATCAGCTCAGAGAAATGGATTGAATATGCTAGGACTGCCTTCTCTGTGGATCCAAGGATCGCCTTATGCTTGGTCTCGAGGTTC
CCAACAAATATTAATTTGAAAGCTGAAGTAACTCAACTAGTTCAGTCACATATTTTGGATCTCCGCTGCATACCTGAAGCATTGCCATATTTTGTCACCC
CGAATGCTGTTGATGAAGATTCAGTGCTTTTGCAACAACTGCCTCACTGGGCTGCTTGTTCAATCACACAAGCACTCGAGTTCCTGACTCCTGCATACAA
GGGGCATCCACGTGTGATGGCATATGTTCTTAGAGTTTTGGAGTCTTATCCTCCAGAGCGAGTGACTTTCTTTATGCCACAGCTAGTGCAGTCTTTGCGA
TACGATGATGGGAGGTTAGTAGAAGGATATTTGCTCAGAGCAACTCAGAGAAGTGATATATTTGCCCATATTCTGATATGGCATCTGCAGGGTGAAACCT
TTCCATCAGAATCTGGTAAAGAAGTTGCCTCTGGAAAGAGTGGTTCCTTTCAAGCACTGTTGCCAGTTGTTCGTCAGCGTATTATTGATGGTTTCACCAC
CAAGGCCCTCAACTTGTTTCATAGGGAGTTTGATTTTTTTGATAAAGTTACATCTATTTCTGGTGTTCTGTATCCACTTTCTAAGGAAGAACGCCGAGCT
GGTATTCGGAGAGAGTTGGAGAAAATTGAATTGGAGGGAGAAGATCTTTACTTACCAACTGCTCCTAGCAAGCTTGTTAGGGGCATCCGGGTGGACAGTG
GAATACCTTTACAATCTGCAGCGAAAGTTCCCATCATGGTGACATTTAATGTGGTTGATCGGTTTGGGGACCAAAATGATGTAAAACCCCAAGCTTGCAT
CTTCAAGGTAGGAGATGATTGTCGACAGGATGTTCTTGCCCTTCAAGTTATAGCACTCCTTAGAGATATATTTGAAGCAGTTGGACTTAATCTCTACTTG
TTTCCTTATGGTGTTCTCCCAACTGGTCCGGAGAGGGGTATAATTGAGGTTGTGCCTAACACACGTAGCAGAAGTCAGATGGGTGAAACAACAGATGGTG
GTTTGTATGAGATCTTTCAACAGGATTATGGGCCTGTCGGCTCTCCTAGTTTTGAAGCTGCACGCGAGAATTTTATCATTAGTAGTGCTGGTTATGCAGT
TGCCAGCCTTCTACTTCAGCCAAAGGATAGACACAATGGGAATCTTCTCTTTGACAACTTGGGGAGGCTTGTTCACATTGATTTTGGTTTCATCTTGGAA
ACATCACCTGGTGGAAATATGCGCTTTGAGAGTGCACACTTCAAGCTGAGCCATGAGATGACTCAATTACTAGATCCCTCTGGGGTTATGAAGAGCGAAA
CTTGGTCCCAATTTGTACGCTTGTGTGTGAAGGGGTACCTAGCAGCCCGCCGCTACATGGATGGGATAATCAACACTGTGATGTTGATGCTTGACAGTGG
GTTACCGTGCTTCAGTAGGGGTGACCCAATTGGAAATCTTCGCAAGAGATTTCACCCTGAGATGAGCGAGCGTGAAGCTGCCAACTTCATGATCCGGGTG
TGCACAGATGCCTACAATAAGTGGACCACAGCTGGCTACGACTTGATACAATACATTCAACAGGGCATTGAGAAGTAA
|
|||||||||||||||||||||||||||||||||||||||||||||
|
AA sequence
|
>Potri.009G113700.1 pacid=42771341 polypeptide=Potri.009G113700.1.p locus=Potri.009G113700 ID=Potri.009G113700.1.v4.1 annot-version=v4.1
MESLIELCDLISQNPAQFADKLTWLCNRCPQPESLLTGSPRVSHSQINAILAVSRFLSITLDHTDNRPKSLILAFFRSIPTSFNPSFWPQSFSTDSIASF
FTGFLAYVSKSAELDPGFSEDVAGFVGEVVMAAIGNNAGENLASSAISRVFLIALTENFVPILPEDGEKLITCLLDQFNVPVPVPSSPSERIGMNSGTSS
SQSSPLSNNVKQHNSSHDASNDISSTVNDLSHMTLSSSSASTTVVVNGSGVTWKSGLESTGVGFDGGGGLSRQQVASFEEETAEGLEKQEIAYKLIGHVL
DCVKIDNKLLELVRFIAKKQLQSLSAFLKIRRRDCNEQGQLLKARVNAKLSVYQAAARMKVQSLASLDVDGKTSKRLVLETLALLIDAAEACLLSVWRKL
KNCEELLSSLLGGIAQIAVTRGGQPMRVLLIRLKPLVLTACAQADTWGGSQGAMFETVMKTSCQIIESGWTRDRAPVDTFISGLASSIRERIDYDDQVDK
EKQGVPAVQLNVIRLLADLTVAVNKSEVVDMILPLFIESLEEGEASTPGLLRLRLLDAVSRIAGLGFEKSYRETVVLMTRSYLSKLSSVGSAESKTLAPE
ATTERVETLPAGFLLIASGLKNMKLRSDYRHRLLSLCSDVGLAAESKSGRSGADFLGPLLSAVAEICSDFDPTVNVEPSLLKLFRNLWFYVALFGLAPPI
QKIQQPTKSVSTTLNSVGSMGTIALQAVGGPYMWNAQWSSAVQRIAQGTPPLVVSSVKWLEDELELNALHNPGSRRGSGNEKAALTQRSALSAALGGRVD
VAAMSTISGVKATYLLAVAFLEIIRFSSNGGILNGGDSLSASRSAFSCVFEYLKTPNLMPAVFQCLMAIVHRAFEAAVFWLEDRITETGNEANVRESTLF
SHACFLIKSMSQREEHIRDISVNLLTQLRDKFPQVLWNSSCLDSLLFSVHNDSPSAVINDPALIASVRSLYQRIVREWISISLSYAPCTSQGLLQEKLCK
ANTWQRTQPTTDVVSLLTEIRIGPSKNDWTGIRTANIPAVMAAAAAASGANLNVTEAFNLEVLSTGIVSATVKCNHAGEIAGMRRLYNSIGGFQSGGAPT
GFGSGLQRLITGAFSQQPPAEDDSFNEMLLNKIVLLLQQFVSIAEKGGEVDKSQFRDTCSQAAAFLLSNLASESKSNVEGFAQLLRLLCWCPAYISTPDS
METGVFIWTWLVSAAPQLGSLVLAELVDAWLWTIDTKRGLFAHEVKYSGPAAKLRPQLAPGEPESLPEIDPVEQIMAHKIWVGFLIDRFEVVRHNSVEQL
LLLGRLLQGTTKSSWNFSRHPAATGTFFTIMLLGLKFCSCHSQGNLQNFKTGLQLLEDRIYRACLGWFAFEPEWFDVNNVNFSISEARSLSVFVHYISND
GQSDARGRGHENGTYLVDMNDQCHPVWGQMENYAAGREKRKQLLMMLCQHEADRLEVWAQPTNSKENTSRPKISSEKWIEYARTAFSVDPRIALCLVSRF
PTNINLKAEVTQLVQSHILDLRCIPEALPYFVTPNAVDEDSVLLQQLPHWAACSITQALEFLTPAYKGHPRVMAYVLRVLESYPPERVTFFMPQLVQSLR
YDDGRLVEGYLLRATQRSDIFAHILIWHLQGETFPSESGKEVASGKSGSFQALLPVVRQRIIDGFTTKALNLFHREFDFFDKVTSISGVLYPLSKEERRA
GIRRELEKIELEGEDLYLPTAPSKLVRGIRVDSGIPLQSAAKVPIMVTFNVVDRFGDQNDVKPQACIFKVGDDCRQDVLALQVIALLRDIFEAVGLNLYL
FPYGVLPTGPERGIIEVVPNTRSRSQMGETTDGGLYEIFQQDYGPVGSPSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDNLGRLVHIDFGFILE
TSPGGNMRFESAHFKLSHEMTQLLDPSGVMKSETWSQFVRLCVKGYLAARRYMDGIINTVMLMLDSGLPCFSRGDPIGNLRKRFHPEMSEREAANFMIRV
CTDAYNKWTTAGYDLIQYIQQGIEK
|
DESeq2's median of ratios [POPLAR]
Coexpressed genes
Potri.009G113700 coexpression network
*The number of genes in the network is adjusted within 50 genes.*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.