Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49330 199 / 1e-61 hydroxyproline-rich glycoprotein family protein (.1) AT2G16190 177 / 2e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152600 [exp] 429 / 1e-151 AT1G49330 193 / 6e-59 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G080300 [exp] 241 / 5e-79 AT1G49330 155 / 1e-45 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015036 [exp] 201 / 6e-64 AT1G49330 189 / 5e-59 hydroxyproline-rich glycoprotein family protein (.1) Lus10040480 [exp] 181 / 1e-55 AT2G16190 171 / 2e-52 unknown protein Lus10011284 [exp] 151 / 3e-45 AT2G16190 128 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G113900.1 pacid=42771783 polypeptide=Potri.009G113900.1.p locus=Potri.009G113900 ID=Potri.009G113900.1.v4.1 annot-version=v4.1 ATGAAGAGCCAAGAAGATTTAGAAACCAATGAGCAAGAGATCTCCACGAAGAGAAAGCACAGCAGTAACAACAACAATAACAACAGCATTAGCCAGCAAG ATTTGGAAGGTGAAGATGATGAAGATTTTGACCTTACACTTTCTTTGTCTTTTGGTCGACCTCCGAGATCCAAAAAGAAAACTACCCTAAACACTACAAG ACCACAGTTATCACTGTCATTGCCGCCACCTGCAACATCATTATCGGTAACTCATCAACCGCTACCCCAGCATCAAGATATCCCTCAAATTGAAATCCCA CCGGATGCCCAGATGACACCAAGGCCTCTTGGCCCTCTTCAGCTTTCTCCCAAACACGCCCCATTCACTGATATTCCTGTGACTGAACCATTGCTATACA CTACTGCTCCAATAAACCATGAAAGTTCCATGGCTGGTCCATCTCGCGCTCCACGCACACGCCGGAACCCTTCTCAGGGTCCCCGCGAAGGGAAAGGGGA AACTGTTCCCGTCTTGTATCCTTGGGCCATGGATCGTCGTGCCATGGTGCATAGCTTGGACTATTTGCTATCAAGAAGAATAGAAACCATCACTGGTTTA GTCCAATGCAAGAGATGTGAAAAACAATTTGAATTAGGGTTTGACTTGAGAGCCAAGTTTGTAGAAATTGGTGCATTTATTTCTCAAAACAAGAGTTTCA TGCATGATAGGGCACCAAGTGATTGGATGAATCCGGTACTGCCCAGGTGCCAATTTTGCGACCAGGAAAATAGCGTGAAGCCTGTGATTGCCAACAAGAA GCAGAAGATTAATTGGTTGTTTTTGCTTTTGGGGCAAATGTTAGGCTGCTGTACTCTTGATCAGTTGAAATATTTTTGCAAGCACACAAAAAATCATCGC ACTGGGGCTAAGGATCGTGTTCTCTATCTTGCTTATCTTGGAATGTGTAAACAGCTTGATCCCAATGGCCCTTTTGATCGCTGA
AA sequence Show only first row Show all	>Potri.009G113900.1 pacid=42771783 polypeptide=Potri.009G113900.1.p locus=Potri.009G113900 ID=Potri.009G113900.1.v4.1 annot-version=v4.1 MKSQEDLETNEQEISTKRKHSSNNNNNNSISQQDLEGEDDEDFDLTLSLSFGRPPRSKKKTTLNTTRPQLSLSLPPPATSLSVTHQPLPQHQDIPQIEIP PDAQMTPRPLGPLQLSPKHAPFTDIPVTEPLLYTTAPINHESSMAGPSRAPRTRRNPSQGPREGKGETVPVLYPWAMDRRAMVHSLDYLLSRRIETITGL VQCKRCEKQFELGFDLRAKFVEIGAFISQNKSFMHDRAPSDWMNPVLPRCQFCDQENSVKPVIANKKQKINWLFLLLGQMLGCCTLDQLKYFCKHTKNHR TGAKDRVLYLAYLGMCKQLDPNGPFDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49330			hydroxyproline-rich glycoprote...		Potri.009G113900 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	6.00	0.7548
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	10.67	0.8005
AT1G04645			Plant self-incompatibility pro...		Potri.018G148700 [exp]	14.28	0.7476	Pt-C541.4
					Potri.010G084600 [exp]	18.08	0.6904
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	20.34	0.6815
AT2G20650			RING/U-box superfamily protein...		Potri.001G400600 [exp]	26.15	0.7116
					Potri.001G020080 [exp]	29.74	0.7784
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053720 [exp]	45.49	0.7502
AT2G27500			Glycosyl hydrolase superfamily...		Potri.004G097400 [exp]	59.89	0.6547
AT4G37860			SPT2 chromatin protein (.1)		Potri.001G257300 [exp]	73.64	0.7309

Compare expression of checked genes

Potri.009G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.