Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34450 1511 / 0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) AT2G16200 97 / 4e-24 structural molecules (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153500 [exp] 1667 / 0 AT4G34450 1513 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040465 [exp] 1540 / 0 AT4G34450 1526 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10026336 [exp] 1530 / 0 AT4G34450 1528 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10023580 [exp] 1485 / 0 AT4G34450 1462 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1) Lus10042326 [exp] 1403 / 0 AT4G34450 1416 / 0.0 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region CL0159 [poplar] [flax] E-set PF08752 [poplar] [flax] COP-gamma_platf Coatomer gamma subunit appendage platform subdomain CL0545 [poplar] [flax] APCOP-app_sub PF16381 [poplar] [flax] Coatomer_g_Cpla Coatomer subunit gamma-1 C-terminal appendage platform
Representative CDS sequence Show only first row Show all	>Potri.009G115100.1 pacid=42772209 polypeptide=Potri.009G115100.1.p locus=Potri.009G115100 ID=Potri.009G115100.1.v4.1 annot-version=v4.1 ATGGCACAACCTCTCGTGAAAAAAGACGATGATCACGACGATGAAGCAGAGTACTCTCCGTTTTTGGGGATTGAGAAGGGCGCTGTTCTTCAGGAAGCTA GGGTTTTTAATGATCCTCAACTTGATCCGAGAAGATGCTCTCAGGTTATCACAAAGCTTCTTTATCTACTGAACCAAGGAGATTACTTCACCAAGACTGA AGCCACAGAAGTTTTCTTTTCCGTGACAAAGCTTTTCCAGTCGAAAGATTTTGGTTTGAGGAGAATGGTTTATTTGATTATAAAGGAATTATCGCCATCA GCAGATGAGGTTATTATTGTCACAAGCTCCCTAATGAAGGACATGAATAGCAAGACTGATATGTACCGAGCAAATGCCATTCGTGTGCTTTGTCGGATAA CAGATGGAACCCTTCTTACCCAGATCGAACGATATCTGAAACAAGCAATAGTTGACAAGAATCCAGTAGTTGCTAGTGCAGCCTTGGTCAGTGGGATTCA TTTACTCCAGACGAACCCAGAGATTGTCAAAAGGTGGAGTAATGAGGTTCAAGAAGCTGTACAGTCAAGGGCTGCCCTTGTACAATTTCATGCACTGGCT TTGCTCCAGCAGATACGACAGAACGATCGACTTGCTGTTAGTAAGTTGGTTACTAGTTTGACTAGGGGAACTGTTCGCTCACCAATGGCTCAATGCCTCT TAATACGTTATGCTAGTCAGGTTATTCGTGAGTCAGCTAACACACAAACAGGGGACCGTCCTTTCTATGATTTTCTGGAGAGTTGTCTGCGCCATAAGGC TGAAATGGTGATATTTGAGGCTGCCAGAGCAATTACAGAGCTCAGTGGTGTGACAAACCGAGAATTGACTCCAGCGATCACTGTTCTCCAGCTCTTCTTG AGTTCGTCCAAGCCTGTGCTGAGATTTGCAGCTGTCCGTACTTTGAACAAGGTGGCCATGACTCATCCCATGGCTGTCACAAACTGCAACATTGATATGG AGAGCTTAATTTCTGACCAGAACAGAAGCATTGCCACTCTTGCAATCACCACTCTACTTAAGACAGGAAATGAATCAAGTGTGGATCGCTTGATGAAGCA GATAACAAATTTCATGTCAGATATAGCTGATGAGTTCAAAATTGTTGTTGTGGAAGCCATAAGGTCACTGTGTTTGAAGTTTCCCTTGAAGTATAGATCA TTGATGAACTTTTTAAGCAACATTCTCAGGGAGGAAGGAGGATTTGAGTACAAAAAGGCTATTGTAGATTCAATTGTGATCCTTATCAGAGATATCCCTG AAGCAAAGGAAAGTGGTTTACTTCATTTGTGTGAATTTATTGAAGATTGTGAATTTACCTATCTATCCACACAGATACTCCACTTTCTGGGGATTGAAGG CCCAAAGACCACAGATCCCAGCAAATACATACGCTATATCTACAACCGTGTGCATCTTGAGAATGCTACTGTCCGGGCTGCTGCTGTGAGCACTCTGGCA AAATTTGGTGCTATGGTTGACGCACTGAAGCCACGAATTTTTGTCCTGTTGAGGCGCTGTATCTTTGACAGTGATGATGAGGTTCGTGATAGAACAACAC TTTATCTCAGCACACTTGGGGGTGATGGTGAAGTGGTTGAAACTGATAGAGACACAAAGACTTTTCTCTTTGGAGACCTGGATATCCCTCTTGTGAATCT GGAGACAAGTTTGAAAAATTATGAGCCTTCTGAAGAGCCTTTTGATATTGATTCTGTTCCAAAAGAAGTCAAGTCTCAGCCGCTTGCTGAGAAGAAAGCC CCAGGCAAAAAGCCAACTGGTCTTGGTGCTCCTCCGGCTGGTCCTCCATCTACCGTTGATGCTTACGAAAGGCTTCTTTCCTCTATTCCAGAGTTTTCGG ACTTTGGGAAGCCTTTCAAGTCCTCGGCACCTGTGGAGCTTACAGAAGCAGAAACAGAATATGCAGTTAATGTTGTTAAGCACATATTTGATAGGCATGT CGTGTTCCAGTACAACTGCACCAACACGATTCCTGAGCAATTATTGGAAAATGTCTCTGTTATTGTGGATTCGTCAGAAGCGGATAACTTTGCAGAAGTA GCATCCAAGCCTTTACGATCTCTTCCTTATGATACACCTGGACAAACCTTTGTGGCATTTGAGAAGCCTAAGGGAATCACTGCTGTAGGAAAGTTTTCAA ACACATTGAGGTTCATTGTTAAAGAGGTTGATCCAACTACTGGTGAGGCAGAGGAGGATGGCGTTGAAGATGAATACCAACTGGAGGACCTTGAGGTTGT TGCAGCAGATTACATGATGAAGGTCGGAGTCTCCAATTTCAGGAATGCTTGGGAAAGCATGGGAGATGAATTTGAGCATGTGGATGAATATGGCCTTGGC CCAAGGGAGAACTTGGCTGAAGCTGTTATCGCTGTCATCAACCTTCTTGGGATGCAGCCTTGTGAGGGAACAGAGGTTGTTGCAACCAATTCAAGGTCAC ACACGTGTCTACTATCTGGTGTTTTCCTAGGCAACGTGAGGGTGCTTGCACGGTTGCAGTTTGGAATTCATGGTTCTAGGGATGTTGCAATGAAACTGGC TGTTAGATCTGAGGATGAAGCCGTCAGTGATACCATTCACGAGATTGTATCAAGCGGCTGA
AA sequence Show only first row Show all	>Potri.009G115100.1 pacid=42772209 polypeptide=Potri.009G115100.1.p locus=Potri.009G115100 ID=Potri.009G115100.1.v4.1 annot-version=v4.1 MAQPLVKKDDDHDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGDYFTKTEATEVFFSVTKLFQSKDFGLRRMVYLIIKELSPS ADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALA LLQQIRQNDRLAVSKLVTSLTRGTVRSPMAQCLLIRYASQVIRESANTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELSGVTNRELTPAITVLQLFL SSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRS LMNFLSNILREEGGFEYKKAIVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTTDPSKYIRYIYNRVHLENATVRAAAVSTLA KFGAMVDALKPRIFVLLRRCIFDSDDEVRDRTTLYLSTLGGDGEVVETDRDTKTFLFGDLDIPLVNLETSLKNYEPSEEPFDIDSVPKEVKSQPLAEKKA PGKKPTGLGAPPAGPPSTVDAYERLLSSIPEFSDFGKPFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVSVIVDSSEADNFAEV ASKPLRSLPYDTPGQTFVAFEKPKGITAVGKFSNTLRFIVKEVDPTTGEAEEDGVEDEYQLEDLEVVAADYMMKVGVSNFRNAWESMGDEFEHVDEYGLG PRENLAEAVIAVINLLGMQPCEGTEVVATNSRSHTCLLSGVFLGNVRVLARLQFGIHGSRDVAMKLAVRSEDEAVSDTIHEIVSSG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	0	1
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	2.64	0.9273
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	2.82	0.9242
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.004G043900 [exp]	4.00	0.9175	NSF.1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.014G124200 [exp]	5.29	0.9105
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Potri.018G096700 [exp]	5.65	0.8868
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	6.00	0.8994
AT3G15410			Leucine-rich repeat (LRR) fami...		Potri.011G121700 [exp]	7.34	0.8763
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G039000 [exp]	7.74	0.9128
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.013G031400 [exp]	8.71	0.8651
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	8.83	0.8942

Compare expression of checked genes

Potri.009G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.