Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34440 573 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 533 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G49270 529 / 1e-180 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 525 / 7e-179 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT3G24550 508 / 3e-173 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 476 / 1e-162 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 439 / 3e-148 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 425 / 7e-140 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 423 / 9e-140 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G23540 423 / 5e-139 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153600 [exp] 706 / 0 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 556 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 548 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 536 / 0 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 472 / 4e-160 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 460 / 2e-155 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 436 / 7e-144 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 430 / 8e-142 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 429 / 5e-141 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 546 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 534 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 530 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 523 / 0 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 524 / 2e-179 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10024020 [exp] 504 / 2e-172 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 496 / 2e-172 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 494 / 1e-168 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10040467 [exp] 493 / 3e-168 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10003066 [exp] 424 / 2e-139 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.009G115200.3 pacid=42771580 polypeptide=Potri.009G115200.3.p locus=Potri.009G115200 ID=Potri.009G115200.3.v4.1 annot-version=v4.1 ATGTCTTCCCCCGAAGAATCTCCGGTTTCTCCACCACCACCATTGGAGTCATCGCCACCTCCAGCAGCGTCCCAGCCCCCACCCCCAGCAGTGATCTCTC CACCACCACCAACAACACCACCACCACCTTCTGAAGAAATCTCACCCCCACCCCCAGCAGAGGTCTCTCCACCACCACCAACAACACCACCACCACCTTC TGATGAAATCTCACCCCCACCGCCACCACCTGAAGACTCAGGTTCTTCACCCCAACCGCCTTCCTCTTCTGATGGAAATAAGTCACCACCCCCCCCTCCC AAAAAAAATGATAATGGTGGTTCTCGGTCGCCTCCACCACCTTCATCATCATCCAAGTTTCACAATTCGCCACCTCCACCACGACCACTAGGGCCATCAA GTGATTCATCATCAAACAATAGCACTAAATCATCTTCAGGCAATGGAGATGGAACTAACCTTGTACCTATTATAGCAGGAGTCGTAGTTGGAGTAGGGGT TTTATTGCTGCTTGCCCTGCTTGTATTTCTCTGTGCATGCAGAAAGAAAAAGAAGAGACATTATGATTACTACAACGATCACTCTCTTGCACCCAAAGCC ACAGGTGGCCCTTATTTCAACGCAGCACCTCCTCAACATCATGCGAGTAATTGGCACAATGAAAGCAAATTCGGAGAGCAAGTTGTAAATCTCCCTCCAC CTCCCGGCGGAGGACATGGAACTTGGTCAACACCACCATCTCATGGTGCAATTATGTCTAGTGAAATGAGTTCCAGTTACTCTGGCCCACACGGTCCGGC ATTGCCTCCCCCATACCCATCACCATCATTGGCTCTTGGGTTCACCAAGAGCAGCTTCAGCTATGAAGAATTAGCAGCAGCAACTGAGGGATTTTCTCAA GCTAAACTACTAGGCCAGGGAGGTTTTGGCTATGTCCATAAAGGGGTGTTGCCTAATGGAAAGGAAATTGCAGTTAAGAGTCTCAAAGCTGGTAGTGGAC AAGGGGATCGTGAATTTCAGGCTGAGGTTGAAATTATTAGCCGTGTCCATCATCGCCACCTTGTGTCGCTTGTTGGTTATTGCATTGCAGGAGATAAAAA GTTGTTGGTTTATGAGTTCGTCCCCAATTCCACCCTTGAATTTCACCTTCATGGTAAGGGTCGTCCGACCATGGACTGGCCTACTAGGCTCAAAATTGCC CTGGGATCAGCCAAAGGACTTGCATATTTGCATGAAGACTGCCACCCACGAATTATCCACAGAGATATTAAAGCGGCAAATATTCTGCTTGACTACAGTT TCGAAGCTATGGTGGCAGATTTTGGATTGGCCAAGTTATCTTCAGACAACTATACTCATGTATCGACTCGTGTCATGGGAACATTTGGGTACTTGGCTCC AGAATATGCTTCCAGCGGCAAGCTTACCGATAAATCTGATGTATTCTCCTTCGGTGTCATGCTATTGGAACTAATAACTGGACGTCTCCCTGTGGATCTC TCTGGGGAGATGGATGACAGCTTGGTAGAATGGGCTACACCTTTATGTGCAAAAGCGCTAGAAGACGGAAACTACGATGAGTTGATTGATCCAGCTTTGG AGGGCAATTACAATCCCCATGAGGTGGCTTGCATGATAGCATGTGCTGGTGCATCAGTTAGTTATTCAGCAAAGAGGCGGCCGAAAATGAGCCAGATTGT ACGAGCACTTGAAGGTGAAGTCTCCTTGGACGAAGGGATAAAACCTGGCCGAGGTTTTATCTTCACCTCCGCTTCCAGTTCTGATTTTGAACAAAGCCCA TATAGTACAGATATACGGAAGTTCAGGAGGACGGCATTAGACGGCATCGATTATGCAAGCAGTGAATTTGATCACACGAGTGAGTACGGGCTGAATCCTT CCTCTTCGAGCAGTGATGAAATGACGAAGAGTCAGAGACGTGGTCCTTGA
AA sequence Show only first row Show all	>Potri.009G115200.3 pacid=42771580 polypeptide=Potri.009G115200.3.p locus=Potri.009G115200 ID=Potri.009G115200.3.v4.1 annot-version=v4.1 MSSPEESPVSPPPPLESSPPPAASQPPPPAVISPPPPTTPPPPSEEISPPPPAEVSPPPPTTPPPPSDEISPPPPPPEDSGSSPQPPSSSDGNKSPPPPP KKNDNGGSRSPPPPSSSSKFHNSPPPPRPLGPSSDSSSNNSTKSSSGNGDGTNLVPIIAGVVVGVGVLLLLALLVFLCACRKKKKRHYDYYNDHSLAPKA TGGPYFNAAPPQHHASNWHNESKFGEQVVNLPPPPGGGHGTWSTPPSHGAIMSSEMSSSYSGPHGPALPPPYPSPSLALGFTKSSFSYEELAAATEGFSQ AKLLGQGGFGYVHKGVLPNGKEIAVKSLKAGSGQGDREFQAEVEIISRVHHRHLVSLVGYCIAGDKKLLVYEFVPNSTLEFHLHGKGRPTMDWPTRLKIA LGSAKGLAYLHEDCHPRIIHRDIKAANILLDYSFEAMVADFGLAKLSSDNYTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRLPVDL SGEMDDSLVEWATPLCAKALEDGNYDELIDPALEGNYNPHEVACMIACAGASVSYSAKRRPKMSQIVRALEGEVSLDEGIKPGRGFIFTSASSSDFEQSP YSTDIRKFRRTALDGIDYASSEFDHTSEYGLNPSSSSSDEMTKSQRRGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.009G115200 [exp]	0	1
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	22.20	0.6108
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.001G387100 [exp]	34.39	0.6315
AT4G13990			Exostosin family protein (.1)		Potri.014G147800 [exp]	35.88	0.6160
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	37.09	0.6555
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	50.43	0.6155
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G047100 [exp]	51.02	0.6040
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	51.67	0.6398
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	61.77	0.6224
					Potri.003G016275 [exp]	87.24	0.6036
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.003G169000 [exp]	101.00	0.5935

Compare expression of checked genes

Potri.009G115200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.