Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AGB1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34460 625 / 0 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT5G67320 99 / 3e-22 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 89 / 8e-19 TAF5 TBP-associated factor 5 (.1) AT2G41500 85 / 8e-18 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 84 / 1e-17 WD-40 repeat family protein / notchless protein, putative (.1) AT5G13480 84 / 3e-17 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G10580 80 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 78 / 7e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 77 / 2e-15 RACK1C_AT receptor for activated C kinase 1C (.1) AT3G15980 77 / 5e-15 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153700 [exp] 719 / 0 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.005G148500 [exp] 99 / 3e-23 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 94 / 1e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 85 / 2e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 82 / 2e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 84 / 3e-17 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 81 / 2e-16 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.012G052700 [exp] 79 / 3e-16 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 78 / 1e-15 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042325 [exp] 694 / 0 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10023579 [exp] 692 / 0 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10040464 [exp] 675 / 0 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10026337 [exp] 664 / 0 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10021059 [exp] 91 / 9e-20 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 91 / 1e-19 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 87 / 4e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 88 / 1e-18 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10039597 [exp] 86 / 4e-18 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 84 / 6e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.009G115300.1 pacid=42772457 polypeptide=Potri.009G115300.1.p locus=Potri.009G115300 ID=Potri.009G115300.1.v4.1 annot-version=v4.1 ATGTCTGTTTCGGAGCTAAAGGAACGCCACGTGGCGGCGACTGAGACAGTGAATTCTTTGGGAGAACGATTGAAGCAGAAACGCCTTCTTTTACTTGATA CAGATATTGCGGGACATGCGAGGGCGCAAGGGAGGAATCCGGTGAGTTTTGGGCCCACCGATCTGGTTTGTTGCAGGATTCTTCAAGGACACACTGGCAA GGTGTATTCATTGGATTGGACCCCTGAAAAGAATAGAATAGTAAGTGCATCTCAAGATGGGCGATTAATAGTATGGAATGCTCTAACAAGTCAGAAAACT CATGCCATAAAGCTACCCTGTGCATGGGTGATGACATGTGCTTTCTCTCCTGCTGGACAATCTGTTGCTTGTGGCGGTCTTGATAGTGTTTGCTCAATTT TTAACCTGAATTCACCAACCGATAAGGATGGGAATCTAACTGTCTCGAGAATGCTTAGTGGGCATAAGGGTTATGTTTCGTCTTGTCAGTATGTTCCAGA TGAGGATACTCATCTGATAACAAGCTCTGGTGACCAGACATGTGTTTTGTGGGATATTACAACAGGCCTGAGAACTTCTGTGTTTGGAGGAGAATTTCAG TCTGGACATACTGCTGATGTGCTAAGTGTCTCAATTAGTGGATCAAACTCAAGAATGTTTGTGTCTGGTTCCTGCGATTCAACTGCCCGGTTGTGGGACA CCCGTGTTGCAAGTCGAGCTGTGCGCACGTTTCATGGGCATGAAGGAGATGTTAATGCTGTAAAGTTCTTTCCAGATGGTAATAGATTTGGAACTGGTTC GGATGATGGAACTTGCAGGTTATTTGATGTCAGGACTGGGCACCAACTCCAAGTTTACTATCAACAGCATGGTGATAATGAGATCGCACATGTAACCTCA ATTGCATTTTCAATATCAGGAAGACTTCTCTTTGCGGGATACTCAAACGGTGATTGTTATGTGTGGGACACTCTATTGGCCGAGGTTGTTTTGAACTTGG GATCTTTGCAGAACTCCCATGAGGGCCGGATCAGCTGTTTGGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTGGGATACAAACCTAAAGAT TTGGGCTTTTGGAGGGCATAGGAAGGTAATCTGA
AA sequence Show only first row Show all	>Potri.009G115300.1 pacid=42772457 polypeptide=Potri.009G115300.1.p locus=Potri.009G115300 ID=Potri.009G115300.1.v4.1 annot-version=v4.1 MSVSELKERHVAATETVNSLGERLKQKRLLLLDTDIAGHARAQGRNPVSFGPTDLVCCRILQGHTGKVYSLDWTPEKNRIVSASQDGRLIVWNALTSQKT HAIKLPCAWVMTCAFSPAGQSVACGGLDSVCSIFNLNSPTDKDGNLTVSRMLSGHKGYVSSCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDVRTGHQLQVYYQQHGDNEIAHVTS IAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGSLQNSHEGRISCLGLSADGSALCTGSWDTNLKIWAFGGHRKVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.009G115300 [exp]	0	1	Pt-AGB1.1
AT1G75640			Leucine-rich receptor-like pro...		Potri.002G027400 [exp]	3.16	0.8138
					Potri.001G020140 [exp]	6.70	0.7734
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	7.87	0.7822	Pt-PSPK3.1
AT5G59960			unknown protein		Potri.009G028500 [exp]	13.67	0.7174
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	18.49	0.7249
AT5G57770			Plant protein of unknown funct...		Potri.018G099000 [exp]	20.24	0.7651
					Potri.003G204425 [exp]	21.65	0.7263
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.018G086700 [exp]	24.65	0.7039
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052232 [exp]	26.24	0.6665
AT4G38520			Protein phosphatase 2C family ...		Potri.009G137400 [exp]	31.74	0.6732	Pt-PP2.7

Compare expression of checked genes

Potri.009G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.