Plant FIBer expression Database

Pt-CAP1.2 (Potri.009G115500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-CAP1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34490 665 / 0 ATCAP1 cyclase associated protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G153900
[exp]
792 / 0 AT4G34490 659 / 0.0 cyclase associated protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023575
[exp]
695 / 0 AT4G34490 647 / 0.0 cyclase associated protein 1 (.1)
Lus10026338
[exp]
694 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Lus10042324
[exp]
685 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1)
Lus10040460
[exp]
679 / 0 AT4G34490 642 / 0.0 cyclase associated protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01213 CAP_N Adenylate cyclase associated (CAP) N terminal
CL0391 CAP_C-like PF08603 CAP_C Adenylate cyclase associated (CAP) C terminal
Representative CDS sequence
>Potri.009G115500.2 pacid=42771495 polypeptide=Potri.009G115500.2.p locus=Potri.009G115500 ID=Potri.009G115500.2.v4.1 annot-version=v4.1
ATGGAGGAGAAACTGATAGAGAGGCTAGAATCAGCGGTGGCGCGATTGGAAGCGCTGTCTTTGAGGAGTGGAGGTGTGGCTTTGAGTGGCGGAGATGATT
CCGCGGCGACGGATCCGTCGATTGTGGCGTTTGATGATTTCATTGGGACATTCTTTGTTAGGGTTTCGAGTGCCGCGGAAAAGATTGGAGGGCAAGTTTT
AGAAGTCACGAGGATTCTAGAACAAGCTCTTAATGTACAAAAGGAACTTCTCATCAAAATCAAGCAAACTCGGAAACCTGATCTTGCAGGATTGGCTGAA
TTTCTCAAGCCATTGAATGAAGTGATCATCAAAGCAAATGCGATGACAGAGGGAAGGAGATCTGATTTCTTTAACCACTTGAAGGCAGCTGCTGATAGTC
TCACAGCTTTAGCTTGGATTGCTTACACTGGAAAGGATTGTGGTATGAGCATGCCTATTGCGCATGTGGAAGAAAGTTGGCAAATGGCTGAGTTTTACAG
TAACAAGATTCTTGTACAGTACAAAAGCAAAGACCCAAACCATGTTGAATGGGCCAAGGCCTTGAAGGATCTATATTTACCAGGTTTGAGGGACTATGTT
AAGAGTCATTATCCCCTGGGCCCAGTTTGGAGCACTACTGGCAAAGCAACGGCCTCTGCTCCATCAAAAGCTCCTGCACCTCCACCTCCTCCACCAGCTT
CTCTCTTCAGTTCTGAATCTTCTCAGCCTTCATCATCAAAGCCAAAAGAAGGGATGGCTGCTGTTTTCCAAGAAATTAGTTCTGGGAAGTCTGTGACTAC
AGGTCTTAAAAAGGTCACAGATGATATGAAGACAAAGAACCGTGCTGATAGAACTGGTGTTGTTGCTGTTACTGAAAAAGGAGGCCGCGCTAGTGCACCT
TCTTTCTCCAAGGCAGGGCCTCCAAAGCTAGAGCTTCAAATGGGTCGTAAGTGGGTCGTCGAGAATCAAATTGGAAAAAAGAATTTAGTAATTGATGACT
GTGATGCAAAACAGTCTGTATATGTTTTTGGATGCAAAGATTCAGTTTTGCAGATTCAAGGCAAAGTTAACAATATAACAATTGACAAATGCACCAAGAT
GGGGGTTGTATTCACGGATGTGGTGGCTGCTTGTGAGATTGTGAATTGCACTGGTGTTGAGGTGCAATGCCAGGGTTCTGCCCCAACAATTTCAGTGGAC
AACACGGGAGGCTGTCAATTATATTTAAGCAAGGATTCCTTGGGGGCATCTATTACTACTGCTAAATCTAGTGAGATCAACGTATTGGTACCTGGTGCAG
AGCCTGGTGGTGATTTGGCGGAGCATGCTTTGCCACAGCAGTTCATTCATGCATTCAAGGATGGCCAGTTTGAAACCACTCCCGTCTCCCACTCTGGAGG
GTAA
AA sequence
>Potri.009G115500.2 pacid=42771495 polypeptide=Potri.009G115500.2.p locus=Potri.009G115500 ID=Potri.009G115500.2.v4.1 annot-version=v4.1
MEEKLIERLESAVARLEALSLRSGGVALSGGDDSAATDPSIVAFDDFIGTFFVRVSSAAEKIGGQVLEVTRILEQALNVQKELLIKIKQTRKPDLAGLAE
FLKPLNEVIIKANAMTEGRRSDFFNHLKAAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVQYKSKDPNHVEWAKALKDLYLPGLRDYV
KSHYPLGPVWSTTGKATASAPSKAPAPPPPPPASLFSSESSQPSSSKPKEGMAAVFQEISSGKSVTTGLKKVTDDMKTKNRADRTGVVAVTEKGGRASAP
SFSKAGPPKLELQMGRKWVVENQIGKKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFTDVVAACEIVNCTGVEVQCQGSAPTISVD
NTGGCQLYLSKDSLGASITTAKSSEINVLVPGAEPGGDLAEHALPQQFIHAFKDGQFETTPVSHSGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34490 ATCAP1 cyclase associated protein 1 (... Potri.009G115500
[exp]
0 1 Pt-CAP1.2
AT5G13710 CPH, SMT1 CEPHALOPOD, sterol methyltrans... Potri.009G058600
[exp]
1.00 0.8619 Pt-SMT.2
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.001G236700
[exp]
3.46 0.8608 ADF1,Pt-ADF.5
Potri.009G037500
[exp]
4.47 0.8568
AT4G15802 AtHSBP Arabidopsis thaliana heat shoc... Potri.010G025000
[exp]
5.47 0.8216
AT4G29340 PRF4 profilin 4 (.1) Potri.018G057600
[exp]
6.48 0.8591 PRO1.3
AT1G72210 bHLH bHLH096 basic helix-loop-helix (bHLH) ... Potri.013G025900
[exp]
12.24 0.8522
AT1G73620 Pathogenesis-related thaumatin... Potri.012G047800
[exp]
13.41 0.8223
AT5G42330 unknown protein Potri.005G250800
[exp]
14.45 0.8201
AT3G03220 ATHEXPALPHA1.22... EXPANSIN 13, expansin A13 (.1) Potri.017G140000
[exp]
14.83 0.7765 EXP2.10
AT1G72210 bHLH bHLH096 basic helix-loop-helix (bHLH) ... Potri.005G039800
[exp]
18.00 0.8117

Potri.009G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.