Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34500 553 / 0 Protein kinase superfamily protein (.1) AT1G01540 466 / 1e-161 Protein kinase superfamily protein (.1.2) AT4G01330 459 / 6e-159 Protein kinase superfamily protein (.1.2) AT4G02630 433 / 1e-148 Protein kinase superfamily protein (.1) AT3G59110 409 / 1e-138 Protein kinase superfamily protein (.1) AT1G56720 394 / 2e-133 Protein kinase superfamily protein (.1.2.3) AT1G09440 391 / 2e-132 Protein kinase superfamily protein (.1) AT2G42960 391 / 3e-132 Protein kinase superfamily protein (.1) AT5G18500 389 / 3e-131 Protein kinase superfamily protein (.1.2) AT3G17420 379 / 7e-128 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G154000 [exp] 717 / 0 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 469 / 2e-162 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 467 / 8e-162 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G059000 [exp] 414 / 6e-141 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 409 / 6e-139 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.005G139500 [exp] 405 / 2e-138 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 404 / 8e-137 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 404 / 8e-137 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 389 / 1e-131 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042324 [exp] 576 / 0 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10023574 [exp] 510 / 8e-180 AT4G34500 547 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 506 / 4e-178 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 468 / 6e-162 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 465 / 2e-160 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10026338 [exp] 472 / 7e-160 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10007919 [exp] 447 / 2e-154 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 447 / 4e-154 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041593 [exp] 445 / 1e-152 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 437 / 4e-152 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G115600.1 pacid=42771408 polypeptide=Potri.009G115600.1.p locus=Potri.009G115600 ID=Potri.009G115600.1.v4.1 annot-version=v4.1 ATGTCGGATTCAGATACTGAAACAAACATCACCGCCAACCACTACAACTCTCTCCCTCACAAACTAGCCTCACAAACGCCATTTTTGAATCTTAAACTCT ATGTATTAATCGCAATTCTCTTACTCTGTATCCTCTTGGTTTCTTTTTCAATATTCCTCTGTGTTCGTTTACGCCGCGCGGCTAGAAAACGCAATAAAAT GAGAGTGAAACACAGTTCGGGTTCGATCCCATTAGTGTCTAAAGAAATTGTGGAGATTAAAGATTTGGTTTTGAAAAATAAAGAGAAAGATGAGGGGAAA ATGGGAAATGTGGGTTTTGTAAAGATGGAGAATGTTGGTGGTGGTGGTGGTGGTGATCTGGAGATGGGAAAGAAGAGTGGAGAGAGTGGTTGTAGTACTG ACGACGTTTCGTCGGTGGATGAAAACATAGGATGGGGTCGGTGGTATAGTTTGAAAGAGCTTGAGATCGCGACACGTGGATTTGCTGAAGAAAATGTGAT TGGTGAAGGAGGGTATGGTGTTGTTTATAGAGGTGTTTTGCAAGGTGGGTATGTGGTTGCTGTCAAGAATTTACTTAATAACAAGGGTCAGGCGGAGAAG GAGTTTAAGGTGGAAGTTGAAGTCATTGGAAAAGTAAGACATAAGAACTTAGTGCGCCTAATTGGGTACTGTGCAGAAGGTGCTCGCAGGATGCTTGTTT ATGAATATGTTGACAATGGAAACTTGGAGCAATGGTTACATGGTGATGTAGGTCCTGTTAGTCCTCTGACCTGGGTTATTCGAATGAAGATTGCAATTGG GACAGCAAAAGGGCTAGCCTATTTACATGAAGGTTTAGAACCTAAAGTTGTTCACCGGGATGTAAAATCCAGTAACATACTTCTCGATAGAAAATGGAAC CCCAAGGTCTCAGATTTTGGATTGGCCAAGCTCTTGGGTTCTGAAGCAAGCTATGTGACTACACGTGTCATGGGGACATTTGGATATGTATCTCCTGATT ATGCAAGCACGGGTATGCTTAACGAGGGGAGTGATGTATACAGTTTTGGAATTCTTCTTATGGAGATGATTACTGGAAGGAGTCCTATTGATTACTCCAG ACCAGCTGGAGAGATGAACTTGGTTGATTGGTTCAAAGGAATGGTAGCAAGTCGTCGTGCAGAAGAGCTTGTAGATCCCCTCATTGAAGTGCAGCCTGCT CCAAGGGCTTTGAAACGAACATTGCTGGTCTGCCTCCGGTGTATAGATTTGGATTCCTGTAAGAGACCAAAAATGGGGCAAATTGTTCATATGCTTGAGG CAGACGACTTTCCTTTTCGTACTGAACTTCGAGCAGTTCGAGAGAATGATCCTCCACCTTCCACTGATTCTATCTCTGACAAAATTCCACATCCAACCAA GCTTGCTGGTAGTGGTGCTGATGTAGAGAGATCAAGGCGAAGATGA
AA sequence Show only first row Show all	>Potri.009G115600.1 pacid=42771408 polypeptide=Potri.009G115600.1.p locus=Potri.009G115600 ID=Potri.009G115600.1.v4.1 annot-version=v4.1 MSDSDTETNITANHYNSLPHKLASQTPFLNLKLYVLIAILLLCILLVSFSIFLCVRLRRAARKRNKMRVKHSSGSIPLVSKEIVEIKDLVLKNKEKDEGK MGNVGFVKMENVGGGGGGDLEMGKKSGESGCSTDDVSSVDENIGWGRWYSLKELEIATRGFAEENVIGEGGYGVVYRGVLQGGYVVAVKNLLNNKGQAEK EFKVEVEVIGKVRHKNLVRLIGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWVIRMKIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWN PKVSDFGLAKLLGSEASYVTTRVMGTFGYVSPDYASTGMLNEGSDVYSFGILLMEMITGRSPIDYSRPAGEMNLVDWFKGMVASRRAEELVDPLIEVQPA PRALKRTLLVCLRCIDLDSCKRPKMGQIVHMLEADDFPFRTELRAVRENDPPPSTDSISDKIPHPTKLAGSGADVERSRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34500			Protein kinase superfamily pro...		Potri.009G115600 [exp]	0	1
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.017G054000 [exp]	2.00	0.7621
AT3G28540			P-loop containing nucleoside t...		Potri.017G123800 [exp]	2.23	0.7419
AT5G43230			unknown protein		Potri.008G177500 [exp]	10.09	0.7644
AT3G28450			Leucine-rich repeat protein ki...		Potri.017G074400 [exp]	12.48	0.7583
AT3G43120			SAUR-like auxin-responsive pro...		Potri.018G132400 [exp]	16.06	0.7305
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.008G086400 [exp]	16.24	0.6936
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.007G080300 [exp]	16.24	0.7126
AT1G23890			NHL domain-containing protein ...		Potri.004G087300 [exp]	16.61	0.6920
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	17.20	0.7206	AUX1.1
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	18.11	0.7559

Compare expression of checked genes

Potri.009G115600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.