Plant FIBer expression Database

Potri.009G116100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39280 759 / 0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G155000
[exp]
886 / 0 AT4G39280 782 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014563
[exp]
777 / 0 AT4G39280 820 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Lus10032123
[exp]
757 / 0 AT4G39280 807 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0040 tRNA_synt_II PF01409 tRNA-synt_2d tRNA synthetases class II core domain (F)
Representative CDS sequence
>Potri.009G116100.1 pacid=42771593 polypeptide=Potri.009G116100.1.p locus=Potri.009G116100 ID=Potri.009G116100.1.v4.1 annot-version=v4.1
ATGGCAGAGGAAGCGATTTTAGGTTACTTACAGAACCACGAAGGAATCTCCGATTCCGGCCAGTTCGCTACTGATCATGGACTCGACCACAGCGACGTCG
TTAATGTCATCAAAAGCCTCCATGGCTTCCGCTACGTCGATGCTCAGGATATTAAGAGAGAGACAGATGTGCTTACCGAAGAGGGTGAAAAATATGCTGA
ACAAGGATCACCTGAAGTTCAGCTTTTCTTGGCTGTACCAGCGGAGGGTAGCATATTGAAAGAAGAATTGCAGAAACTGGTGGATCCTGCAGTTTTCAAA
ATAGGATGTTCTCAGGCTGCAAAAAATAAATGGGTTCAAATGGGAAATCAAATATCTAGGAAGGTTCAACATGTGGAAGACAGAATAAAGGATCTTCTTT
TACAGATACGAGATGGACAGGAAATTGACACAGGTGATAAGAAGTCTCTCAAAGCTAGAAAGCTTATTGCTGTGCAAACCTGGAAGGGCTACTCGGTGAG
AAAAGGTCCTGATTATGCTCCAATAAGAAGGAGAACTGCAACTGATTTGACTCGTGAATATCTACAGGGGGGTGATTGGAGGAATATAGAGTTCAAAGAG
TATAACTTCAGTGCCAAAGGTCCACCACCTGAAGGTGGCCATCTTCACCCACTCAACAAGGTGAAAGAGCGACTGAAGGACATTTTTCGTCTAATGAACT
TTGAGGAAATGCCTACAAATAGATATGTAGAGAGCAGCTTCTGGAATTTTGATGCACTGTTCCAGCCACAACAACATCCTGCCCGTGATTCGCATGATAC
CTTCTTTCTTAAAGCTCCTGAAACAACAAAGCAACTGCCTGAAGATTATGTTGAGCTGGTGAAACGTGTGCATGAGTCTGGTGGCTATGGGTCAAGGGGA
TATGGATATGATTGGAAAAGAGAAGAAGCAAACAAAAACCTTTTGCGAACTCATACGACTGCAATTTCTTCTCGGATGCTTTATGCGGTAGCACAGCTTG
CAAAACAGCAATCGTTTACCCCCAAAAGGTACTTCTCCATAGATCGAGTTTTCAGAAATGAAGCAGTAGATCGAACTCATCTAGCAGAATTCCACCAGAT
AGAAGGTCTGGTGTGTGATCGAGGGCTTACTCTAGGTCACTTGATTGGAGTGTTGCAGGACTTCTTTTCACGTTTAGGCATGGACAAGCTGAAATTCAAG
CCTGCATATAATCCATATACTGAGCCTAGCATGGAGATTTTCAGTTATCACGAAGGCCTTGGGAAATGGGTGGAGATTGGTAATTCTGGCATGTTTAGAC
CTGAAATGTTGCGTCCTATGGGATTCTCAGAAGATGTTAATGTTATTGCATGGGGCCTTTCGCTTGAAAGACCAACCATGATATTATACGGGATCGATAA
TATCAGGGAGCTTTTTGGACACAAGGTGGATCTTGCCCTCGTCAAGAGAAACCCTCTCTGCCTTATTGGGATTCAGTAG
AA sequence
>Potri.009G116100.1 pacid=42771593 polypeptide=Potri.009G116100.1.p locus=Potri.009G116100 ID=Potri.009G116100.1.v4.1 annot-version=v4.1
MAEEAILGYLQNHEGISDSGQFATDHGLDHSDVVNVIKSLHGFRYVDAQDIKRETDVLTEEGEKYAEQGSPEVQLFLAVPAEGSILKEELQKLVDPAVFK
IGCSQAAKNKWVQMGNQISRKVQHVEDRIKDLLLQIRDGQEIDTGDKKSLKARKLIAVQTWKGYSVRKGPDYAPIRRRTATDLTREYLQGGDWRNIEFKE
YNFSAKGPPPEGGHLHPLNKVKERLKDIFRLMNFEEMPTNRYVESSFWNFDALFQPQQHPARDSHDTFFLKAPETTKQLPEDYVELVKRVHESGGYGSRG
YGYDWKREEANKNLLRTHTTAISSRMLYAVAQLAKQQSFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLGHLIGVLQDFFSRLGMDKLKFK
PAYNPYTEPSMEIFSYHEGLGKWVEIGNSGMFRPEMLRPMGFSEDVNVIAWGLSLERPTMILYGIDNIRELFGHKVDLALVKRNPLCLIGIQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39280 phenylalanyl-tRNA synthetase, ... Potri.009G116100
[exp]
0 1
AT4G26220 S-adenosyl-L-methionine-depend... Potri.018G070300
[exp]
1.00 0.8657
AT5G45590 Ribosomal protein L35 (.1) Potri.003G099900
[exp]
6.32 0.8098
AT1G76860 Small nuclear ribonucleoprotei... Potri.002G068800
[exp]
6.70 0.8065
AT5G66290 unknown protein Potri.007G014000
[exp]
8.06 0.7675
AT4G28440 Nucleic acid-binding, OB-fold-... Potri.007G137600
[exp]
11.48 0.8061
AT3G18940 clast3-related (.1) Potri.004G148500
[exp]
12.96 0.7430
AT3G13580 Ribosomal protein L30/L7 famil... Potri.008G008000
[exp]
13.67 0.7738 RPL7.3
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.008G053601
[exp]
16.73 0.8005
AT3G58470 nucleic acid binding;methyltra... Potri.016G063600
[exp]
16.97 0.7813
AT5G28060 Ribosomal protein S24e family ... Potri.005G049400
[exp]
22.62 0.7522 Pt-RPS24.1

Potri.009G116100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.