Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21710 747 / 0 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G02990 145 / 1e-36 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT1G78930 142 / 2e-35 Mitochondrial transcription termination factor family protein (.1) AT2G44020 137 / 2e-34 Mitochondrial transcription termination factor family protein (.1) AT4G14605 107 / 3e-24 Mitochondrial transcription termination factor family protein (.1) AT5G55580 103 / 6e-23 Mitochondrial transcription termination factor family protein (.1) AT4G38160 99 / 2e-22 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G34620 92 / 4e-20 Mitochondrial transcription termination factor family protein (.1) AT2G36000 90 / 3e-19 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT3G18870 85 / 4e-18 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116700 [exp] 156 / 8e-41 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 141 / 2e-35 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 140 / 4e-35 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 124 / 2e-30 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.001G361800 [exp] 113 / 3e-26 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 111 / 1e-25 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 100 / 5e-23 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.011G081400 [exp] 100 / 7e-23 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 93 / 3e-20 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042322 [exp] 820 / 0 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10026342 [exp] 274 / 3e-84 AT2G21710 222 / 3e-65 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 142 / 6e-36 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 140 / 4e-35 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 139 / 5e-35 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 128 / 2e-32 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 119 / 2e-29 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10003775 [exp] 120 / 1e-28 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 118 / 6e-28 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004219 [exp] 106 / 1e-24 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.009G116200.1 pacid=42771828 polypeptide=Potri.009G116200.1.p locus=Potri.009G116200 ID=Potri.009G116200.1.v4.1 annot-version=v4.1 ATGCTCTCTTGTCCACATCATCACCATCCCCTCCACTTCTACCACCACAGAAACCGCAATTCTACCACCATTCTCCAGCTCTCCTCTTCCCACCACCACC ACCACCCCGACCAAACCCCTCAAAACCATGTCACCACCACAACGATAACGACCAATGACAAACCGATCCTCAGGACCCATAACTCCAAATCCACCTCTCT CCTCATCCATCACCTAAAATCACCAAATCAGACCCAAAACAAGATTGAAACTTCACAGGATGTAATTACACCAGAAGAGAGAGTTAAACTTCAAGAACTA ACTCTCGTAACTAAAAAAAGAATCCCACGATTCCCAGGTTCAGTTTTTCAAACAAAAGCAGAATCTTTAGACTCTCCCTTGCAAACCCTATTCAGAAACC AAAGTGAAGATGAATATAACAGTGAAAACGATGATGATTTTGACGAAGAAATGGTGGTGAAAGCTATTGAGATACGTAGGAAGGTGACAGCTGAGATTTT CAAACAAGCAATGAGGAAGAAAGGGAAGTTTGGGATTACGTATTCGACGAATTTGGTTAATAGATTGGATGATTTTGTTGATTTTGTCATGATTAAGGCT GCTGCAATGAAGAGAATGGATGAATTTGAGTTTTTGAGTTTTAATGACAGAGCTAGAAGGGTTATTGAGGAGTTGAATGTCGTACCACTGATAAGGTGGT TGAAACACAATGCAGTGTCATATCCTAGGATTGCTAAGCTTATTTACATGTCAAGAGGAAATGTTGATTCCATTAGACGTGTTACTGAGTGGTTGAAATC AATTCATGTGAAGGGGGAATTTCTTGGTTCGGTGCTCACAAAGGCAGGAGAAAATATTTTGGAACGATCTATTGAAGAATTGGATGAAATTGTTTGGTAT TTAGAGAGCAATGGAGTGAGAATGGATTGGATGGGTTATGTAATGAGTCGATGTCCTCAATTGTTGTGTTGTAGCATGGAAGAAGTGAAAACTCGAGTGG GGTTCTTCTTGGATATGGGCATGAATGAGAAGGATTTCGGCACAATGGTCTTTGATTATCCCAGGGTACTTGGATACTTTACCTTGGAAGAGATGAACCA AAAGGTTAATTATCTGAAGGAGTTTGGCCTCAGCAATGAAGATGTTGGGAGATTACTAGCATTTAAGCCACAGTTGATGGGTTGTTCCATTGAAGAAAGA TGGAAGCCTCTTGTTAAGTATTTATACTACCTTGGAATTTCACGTGATGGTATGAAGAGAATGCTTGTCATTAAACCAATGGTTTTCTGTGTTGATTTGG AGCAAACGATAGTGCCTAAGGTACGATTTTTTCAGGATATAGGCATTAGAGATGATGCTATCGGCAACATGCTTGTAAAGTTTCCTCCGTTGTTAACATA CAGCCTTTACAAGAAAATCCGGCCAGTGGTCATATTCTTGATGACAAAAGCCGGAGTTAGTGAGAGAAATATCGCGAAGGCTATAGCTTTGGGACCTGAG CTCTTGGGATGCAGCATAGTGAATAAGCTTGAGATCAATCTGAAATACCTCCTCTCACTTGGCATACGCCATCGACAGTTGGGTGAGATGATTGCTGATT TTCCCATGCTACTGCGGTACAATATAGATCTCCTCCGTCCGAAGTACAAGTACTTGAGGCGAACTATGGTGCGGCCTTTGCAGGATCTCATTGAGTTTCC AAGGTTCTTCAGCTATTCTCTCGATGACCGAATAATTCCAAGGCACAAGGTTCTGGTAGAGAATCGAATTAATTTTAAACTGCGGTACATGCTAGCTTCC ACAGACGAAGAATTTCAGAAGAAGGTTGAGGCTGCTGTGGAAAGGCGTCGAAAATTTGAATCTGGTTTGATGGGTGATAATTCTCAAGCATCTGATGCCG ACTCTTCAGAAGAGGAGACAGATGTTCAGTTTCCTGAAACTGAGATTATCGTTTCCAGTTCTCCAAAAACACGGTTTAATTTCAATTCTCTTGGAAGTGG GGATTCTGAAGACTTAAATTAA
AA sequence Show only first row Show all	>Potri.009G116200.1 pacid=42771828 polypeptide=Potri.009G116200.1.p locus=Potri.009G116200 ID=Potri.009G116200.1.v4.1 annot-version=v4.1 MLSCPHHHHPLHFYHHRNRNSTTILQLSSSHHHHHPDQTPQNHVTTTTITTNDKPILRTHNSKSTSLLIHHLKSPNQTQNKIETSQDVITPEERVKLQEL TLVTKKRIPRFPGSVFQTKAESLDSPLQTLFRNQSEDEYNSENDDDFDEEMVVKAIEIRRKVTAEIFKQAMRKKGKFGITYSTNLVNRLDDFVDFVMIKA AAMKRMDEFEFLSFNDRARRVIEELNVVPLIRWLKHNAVSYPRIAKLIYMSRGNVDSIRRVTEWLKSIHVKGEFLGSVLTKAGENILERSIEELDEIVWY LESNGVRMDWMGYVMSRCPQLLCCSMEEVKTRVGFFLDMGMNEKDFGTMVFDYPRVLGYFTLEEMNQKVNYLKEFGLSNEDVGRLLAFKPQLMGCSIEER WKPLVKYLYYLGISRDGMKRMLVIKPMVFCVDLEQTIVPKVRFFQDIGIRDDAIGNMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVSERNIAKAIALGPE LLGCSIVNKLEINLKYLLSLGIRHRQLGEMIADFPMLLRYNIDLLRPKYKYLRRTMVRPLQDLIEFPRFFSYSLDDRIIPRHKVLVENRINFKLRYMLAS TDEEFQKKVEAAVERRRKFESGLMGDNSQASDADSSEEETDVQFPETEIIVSSSPKTRFNFNSLGSGDSEDLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	0	1
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	2.44	0.9785
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	3.46	0.9733
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	3.74	0.9554
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	4.00	0.9597
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Potri.001G459900 [exp]	4.00	0.9387
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	6.70	0.9537
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Potri.002G032500 [exp]	7.54	0.9188
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	7.93	0.9159	Pt-NADK2.1
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	8.12	0.9465
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	8.12	0.9576

Compare expression of checked genes

Potri.009G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.