Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 887 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 428 / 3e-136 Leucine-rich repeat protein kinase family protein (.1.2) AT1G75820 209 / 9e-56 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 191 / 5e-50 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G58690 161 / 7e-43 Protein kinase superfamily protein (.1) AT3G24550 161 / 3e-41 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G10620 161 / 5e-41 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G61860 155 / 6e-41 Protein kinase superfamily protein (.1) AT1G55610 161 / 2e-40 BRL1 BRI1 like (.1.2) AT3G13380 160 / 7e-40 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155100 [exp] 1279 / 0 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G260100 [exp] 775 / 0 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G196600 [exp] 501 / 9e-164 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G143100 [exp] 173 / 4e-47 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.017G145200 [exp] 164 / 2e-41 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 162 / 6e-41 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G110400 [exp] 160 / 1e-40 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 155 / 2e-40 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.001G472900 [exp] 161 / 3e-40 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040455 [exp] 919 / 0 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023570 [exp] 906 / 0 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010823 [exp] 703 / 0 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017647 [exp] 157 / 2e-41 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10033606 [exp] 155 / 1e-40 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10006817 [exp] 157 / 9e-39 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 156 / 1e-38 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10034897 [exp] 149 / 6e-38 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10029187 [exp] 146 / 7e-38 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011098 [exp] 151 / 1e-37 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.009G116300.2 pacid=42771881 polypeptide=Potri.009G116300.2.p locus=Potri.009G116300 ID=Potri.009G116300.2.v4.1 annot-version=v4.1 ATGGCGGATCAAAGGATTGTATTAGCATTAAAGTTTTTACTTCTGGTGTTGTTTTTTGAGTCTACATTTGAGCAACAACAGCAAGAGAGGCTTACCTCAC CAATAGAGAGAGCAGCTTTACTCGGACTAAGATCTTCTTTGGGGTTAAGAAGCAGGGACTGGCCAATAAAGGCAGACCCTTGTTCAATTTGGAATGGTAT CAAATGTGAGAATGGTAGTGTTAGTGAAATTAACATTTCAGGGTTTAAAAGGACTAGACTTGGTTCTCAAAACCCACAATTTAGAGTTGATTCTCTTGTT AATTTAACAAGACTTAAATCTTTTAATGCTTCTGGTTTTTATCTTCCTGGTTCAATTCCTGATTGGTTTGGTCAAAGGCTTGTTTCCCTTCAAGCTCTTG ATCTTTCTTCTTGCTTGATAAGCAATGCTATTCCGGGGAGTTTAGGGAATTTGACCAGTTTGACTGTTCTTTATTTGCATGATAATAACTTGACGGGTAT GATTCCGTCGAGTTTGGGACAATTGGTGGGACTTTCAGTACTTGATCTTTCGTCAAATATGTTTACTGGATCTATTCCTGTATCATTTGGTTCGCTTCAG AATTTGACAAGGCTTGATATTTCTATGAATTTCTTGTTCGGTTCGGTTCCACCTGGCATTGGGATGCTTTCAAAGCTTCAGTATTTGAATCTTTCCATCA ATGACTTGTCTTCTTCGATACCTGCTCAGCTTGGTGACCTTAGGAACTTGGTTGACCTTGATCTGAGCTTCAATTCATTATCTGGGTCATTGCCAGCAGA GTTGAGAGGCTTGAGGAATTTGCAGAGAATGCTGATTGGGATCAATTTGCTTGGTGGGTCTTTGCCAGTCAATTTGTTTCCTGTTCCAAGTCAGTTGCAG ACTGTGGTGTTGAAGAGCAATGGTTTTATTGGTGCGGTCCCTGATGTGCTGTGGTCAATGCCTCGATTGCGCTTGCTTGATATCTCCGGCAACAATTTCA CTGGTATGCTGTCAAATGCTAGTTTGAATACTAACACTACCACTGCAGAATTGAATGTATCCCAGAATTTGTTTTATGGAGGTCTTACACCTGTGTTGAG AAGGTTCAGCTTTGTAGACTTGTCAGGTAATTATTTTGAAGGCAGGGTTCCAGATTATGTGAGTGACAATGCTTCTCTTGTTAGCAACTGTCTCCAAAAT TTGTCAAATCAGAGGAGTTTGCTTGGCTGTACATCTTTCTATACTGAAAAGGGCTTGATTTTTGATAATTTTGGACTCCCGAACTCCACACAGCCTCCTG CAAGGGAAAATTCAGGGAAGAGCAAAAGAAAGGTCATCATATTGGTAAGTGTTTTGGGAGGATTTGGGCTTATTCTGCTTTTGGTGATATTGATAGTGCT GCTGCTCTTTTTCATCCGTAAGACGGGAAATAAAACTCAAAGAGGGGTTGGGGTTGGTCCAGCAACTCCAGTTCCTTCTGGGAGCAGTCCACCACCTCCC GGTGTATCAATTGACTTTTCAAGTTTAGGAGACATATACACATATCAGCAGCTTCTCCTAGCAACTGGTGACTTTGGCGATGTGAACCTCATCAAATATG GCCATTCAGGGGATCTCTACAAGGGAATCTCGGAAAGTGGGATCCCTGTGGTTATAAAAAAGATTGATCTGCAGTCCCATAGGAAGGAAGCGTACTTATT GGAATTGGATTTTTTTAGTAAAGTTTCAAATCCCAGATTGGTTCCCCTTTTGGGACATTGCCTGGAGAAAGAAAATGAGAAATTCCTGATATACAAACAT ATGCCAAATGGAGACTTGTCAAGTTCCTTATACAGGAAAACCAATTCAGAAGATGGTTTGAAATCATTAGATTGGATAACAAGACTGAAAATTGCGATAG GAGCTGCTGAGGGTTTATCATATCTTCATCATGAATGCACTCCGCCCATTGTGCACAGAGATGTTCAAGCAAGCAGTATACTCCTTGATGATAAATTTGA AGTACGGTTAGGGAGCCTGAGTGAAGTCTGCACTCAAGAAGGAGATACACATCATAGCAGGATTACCAGGTTTCTGCGTTTGCCTCAGTCATTGGAGCAA GGTACTTCTGGTTCATTGACAACCACGTGTGCCTATGATGTTTATTGCTTTGGGAAGGTATTACTCGAGTTAGTTACAGGAAAGCTGGGCATCAGTGCAT CTAGTGATGCTCAGCTGAAGGAATTTTCAGAACAGATTCTACCCTTCATTAGTATCTACGACAAGGAACTTGTAATAAAAATTGTGGATCCATCCCTGAT CATTGATGAGGATCTGTTGGAGGAAGTTTGGGCAATGGCCATTGTTGCGAGGTCTTGCCTCAATCCAAAGCCTTCAAGGCGCCCTCTTATGAGATACATC CTCAAGGCTTTGGAAAATCCTTTGAAGGTAGTGAGGGAAGAAAATTCTGGTTCTGCAAGGCTTAGAACAACATCTTCTAGATCTTGGAATGGTTCTCTAT TTGGGAGTTGGCGTCACAGCTCATCTGATGTAGCAGTCATTCCAGCAGCCTCCAGTGCCAGGCCAGGAGGAAGTAGTTTTAAACAGTCAGGAACTTCGAA CTCTCAGGGTAGTGGCCAAAATGGTGGTGGCGACCATTCCTCATCACATAGACGGCATTCTAGAGAGATTTTCCCTGAACCATATGATGAGCAGGATGTA GAGAAACAGGATTAA
AA sequence Show only first row Show all	>Potri.009G116300.2 pacid=42771881 polypeptide=Potri.009G116300.2.p locus=Potri.009G116300 ID=Potri.009G116300.2.v4.1 annot-version=v4.1 MADQRIVLALKFLLLVLFFESTFEQQQQERLTSPIERAALLGLRSSLGLRSRDWPIKADPCSIWNGIKCENGSVSEINISGFKRTRLGSQNPQFRVDSLV NLTRLKSFNASGFYLPGSIPDWFGQRLVSLQALDLSSCLISNAIPGSLGNLTSLTVLYLHDNNLTGMIPSSLGQLVGLSVLDLSSNMFTGSIPVSFGSLQ NLTRLDISMNFLFGSVPPGIGMLSKLQYLNLSINDLSSSIPAQLGDLRNLVDLDLSFNSLSGSLPAELRGLRNLQRMLIGINLLGGSLPVNLFPVPSQLQ TVVLKSNGFIGAVPDVLWSMPRLRLLDISGNNFTGMLSNASLNTNTTTAELNVSQNLFYGGLTPVLRRFSFVDLSGNYFEGRVPDYVSDNASLVSNCLQN LSNQRSLLGCTSFYTEKGLIFDNFGLPNSTQPPARENSGKSKRKVIILVSVLGGFGLILLLVILIVLLLFFIRKTGNKTQRGVGVGPATPVPSGSSPPPP GVSIDFSSLGDIYTYQQLLLATGDFGDVNLIKYGHSGDLYKGISESGIPVVIKKIDLQSHRKEAYLLELDFFSKVSNPRLVPLLGHCLEKENEKFLIYKH MPNGDLSSSLYRKTNSEDGLKSLDWITRLKIAIGAAEGLSYLHHECTPPIVHRDVQASSILLDDKFEVRLGSLSEVCTQEGDTHHSRITRFLRLPQSLEQ GTSGSLTTTCAYDVYCFGKVLLELVTGKLGISASSDAQLKEFSEQILPFISIYDKELVIKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPSRRPLMRYI LKALENPLKVVREENSGSARLRTTSSRSWNGSLFGSWRHSSSDVAVIPAASSARPGGSSFKQSGTSNSQGSGQNGGGDHSSSHRRHSREIFPEPYDEQDV EKQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16250			Leucine-rich repeat protein ki...		Potri.009G116300 [exp]	0	1
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.014G082400 [exp]	25.09	0.7140
AT2G23810		TET8	tetraspanin8 (.1)		Potri.018G099800 [exp]	34.48	0.7198
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.011G156100 [exp]	39.79	0.7412	MUR4.2
AT2G46620			P-loop containing nucleoside t...		Potri.015G007800 [exp]	47.24	0.6704
AT3G23200			Uncharacterised protein family...		Potri.008G165500 [exp]	81.10	0.7237
AT3G09980			Family of unknown function (DU...		Potri.010G235600 [exp]	106.43	0.7076
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087100 [exp]	155.56	0.6917	LAC110b
AT4G26020			unknown protein		Potri.018G141166 [exp]	156.17	0.6958
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	163.82	0.6650
AT5G11540			D-arabinono-1,4-lactone oxidas...		Potri.018G039600 [exp]	165.62	0.6578

Compare expression of checked genes

Potri.009G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.