Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 296 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 184 / 4e-56 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 154 / 1e-44 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 153 / 2e-44 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 154 / 3e-44 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 147 / 4e-42 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 126 / 9e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 122 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 45 / 5e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G117000 [exp] 433 / 7e-154 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 395 / 3e-139 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 392 / 9e-138 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 384 / 3e-134 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 375 / 4e-131 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 316 / 1e-107 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 312 / 2e-106 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 173 / 4e-52 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 152 / 1e-43 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041747 [exp] 311 / 1e-105 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 258 / 4e-85 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 162 / 3e-47 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 157 / 5e-46 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 152 / 1e-43 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 149 / 2e-42 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 147 / 1e-41 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 136 / 8e-38 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 135 / 4e-37 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10028302 [exp] 119 / 4e-32 AT2G18360 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.009G117100.1 pacid=42771699 polypeptide=Potri.009G117100.1.p locus=Potri.009G117100 ID=Potri.009G117100.1.v4.1 annot-version=v4.1 ATGGGGAAAAGCTTAGCAATGTACATGTCCTTGTTGCGTGTCCTATTGAGGCTAGTCGGCGTGAGATCCCAAGTAGTAGAGATCGAACCAGGGACGCTCG TCCACTTTTGGGCGCCAGCTGAAAACCCAAATAAGACCAAAATCCACAACCAAGCCAAGAGAAAACCTGCTGTGGTGTTTCTTCATGGTTTTGGATTTAA TGGGATTTCAACATGGCAATTTCAGATGCTAGCTCTGGCCAAGGACTATGCTATTTATGTTCCAGATTTCCTCTTCTTTGGGGGCTCATTCACTGATAAA ACCGAGCGGTCACCGGCTTTTCAAGCAGAATGTATGGCCAAGGGTCTAAAGAAGCTTGGCGTGGAGAAGTGTACTTTGGTTGGGTTAAGCTATGGAGGAA TGGTTGGCTTCAAGATGGCTGAGATGTACCCTGACTTGGTTGATTCAATGGTTGTGACTTGCTCTGTTATGGCCTTGACTGAGTCCATCACTCGTGCCGC CCTAGAAAGAATCGGCTTCTCATCATGGGCAGAAGTCTTAATTCCTGAAACATTTGAAGGTGTGAAAAAAATTGCAGAACTTTGTACCTACAAGTCCTTA GCGATGCCTGATTTTTTCTACAGAGACATTTTCCAGGATATGTTTATAAATCACAAGAAGGAGAGAGCTGAACTTCTGGAGGCACTTCAAGTGAAGGACA AGGACTTCTACATCCCTCATTACCCACAAGCACAGAGGATACATCTCTTATGGGGCGAGGAGGACGTATTTTTCACCATGGAAATCGCACGCAACTTGAA AGAGAGACTACTAGGGGGCAAAGCGACGTTGCATTACGTAGAGAAGGCAGGGCACGTGGTTCAATCGGAACGACCGTGCGCTTACAACAGGCAACTCAAG AAAATCCTTGCCTCTTTGTATGCAAATTGA
AA sequence Show only first row Show all	>Potri.009G117100.1 pacid=42771699 polypeptide=Potri.009G117100.1.p locus=Potri.009G117100 ID=Potri.009G117100.1.v4.1 annot-version=v4.1 MGKSLAMYMSLLRVLLRLVGVRSQVVEIEPGTLVHFWAPAENPNKTKIHNQAKRKPAVVFLHGFGFNGISTWQFQMLALAKDYAIYVPDFLFFGGSFTDK TERSPAFQAECMAKGLKKLGVEKCTLVGLSYGGMVGFKMAEMYPDLVDSMVVTCSVMALTESITRAALERIGFSSWAEVLIPETFEGVKKIAELCTYKSL AMPDFFYRDIFQDMFINHKKERAELLEALQVKDKDFYIPHYPQAQRIHLLWGEEDVFFTMEIARNLKERLLGGKATLHYVEKAGHVVQSERPCAYNRQLK KILASLYAN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001400 [exp]	3.46	0.9651
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	6.16	0.9736
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.004G082000 [exp]	6.92	0.9672
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	11.04	0.9680
					Potri.005G184800 [exp]	11.83	0.9567
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.014G057700 [exp]	12.08	0.9070
AT5G39860	bHLH	BNQ1, BHLH136, ...	PACLOBUTRAZOL RESISTANCE1, BA...		Potri.017G081300 [exp]	12.84	0.9678
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Potri.005G073300 [exp]	15.23	0.9232
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	16.43	0.9664
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.011G003900 [exp]	20.19	0.9117

Compare expression of checked genes

Potri.009G117100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.