Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBERp6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 323 / 2e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 322 / 3e-110 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 316 / 1e-107 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 281 / 5e-94 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 274 / 2e-91 NmrA-like negative transcriptional regulator family protein (.1) AT4G13660 221 / 2e-70 ATPRR2 pinoresinol reductase 2 (.1) AT1G32100 220 / 3e-70 ATPRR1 pinoresinol reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 323 / 6e-111 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 320 / 2e-109 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 317 / 2e-108 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 315 / 2e-107 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 287 / 5e-96 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 278 / 1e-92 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.003G100200 [exp] 256 / 4e-84 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 250 / 7e-82 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.001G133300 [exp] 249 / 1e-81 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023558 [exp] 441 / 7e-157 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 320 / 3e-109 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10040443 [exp] 318 / 1e-108 AT4G34540 290 / 5e-98 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 317 / 5e-108 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 300 / 2e-101 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 298 / 6e-101 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 291 / 4e-98 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 296 / 7e-98 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 259 / 7e-86 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10007599 [exp] 246 / 1e-76 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.009G118000.1 pacid=42772172 polypeptide=Potri.009G118000.1.p locus=Potri.009G118000 ID=Potri.009G118000.1.v4.1 annot-version=v4.1 ATGGATGAGAAGAAGAGCAAAGTACTAATAATAGGAGCAACAGGAAATTTAGGATACCATTTAGCACAATTTAGCCTGAAATTCTCACACCCCACTTTTG TTCTTGTTAGAGACTCTGCTCCTAATGACCCTGTTAAAGCACAAAAGCTTCAGTCTTTGTCCAATTGTGGTGCCACACTCATAAAGGGGTCATTGGAGGA TGAGAAGAGTCTTGTGGGGGCAGTGAAGCAAGTAGAAGTGGTGATATGTTCAATCCCATCAAAACATGTTCTTGAACAGATGGTACTTATTAGAGTTATT AAAGAAGCTGGGTGCATCAAGAGGTTTATTCCTTCTGAATTTGGAGCCGATCCAGATAGAATTCAAATATCTGACATGGACTACAACTTCTACTTGCGGA AAGCTGAGATTCGGCGTCTTGTCGAAGCTGAAGGCATTCCCTATACTTACATCTCCTGCAATTTCTTGACAAGCTATTTACTTCCATCGTTAGTTCAACC GGGGTTAAAGACTCCACCCAGAGACAAGATCAGAGTGTTTGGAGATGGGAATGTTAAAGCTGTCTTTGTCAAGGAACAGGATGTTGCTGCCTTCACAATA TGTTCAATGGATGACCCACGTACATTGAACAAGGTGCTATATTTGAGGCCTCCAGGAAATGTTTACTCGATGAACGAGCTGGTTGAGATTTGGGAGAGTA AGATTGGGAAGAAGCTTGAGAAGATTTATGTACCAGAAGATGAGCTGCTTATGAAAATCAAAGAGACTCCATATCCGGACAACATGCAGATGATTTTCAT ATACTCTGCATTTGTAAAAGGAGATCACACATACTTTGACATTGATTCTCACAGTGGAGCAGAAGGGACACAACTATATCCAAATGTGAAATACGCTACA ATCAGCGAGTTTTTGGAGACCTTGTTGTAA
AA sequence Show only first row Show all	>Potri.009G118000.1 pacid=42772172 polypeptide=Potri.009G118000.1.p locus=Potri.009G118000 ID=Potri.009G118000.1.v4.1 annot-version=v4.1 MDEKKSKVLIIGATGNLGYHLAQFSLKFSHPTFVLVRDSAPNDPVKAQKLQSLSNCGATLIKGSLEDEKSLVGAVKQVEVVICSIPSKHVLEQMVLIRVI KEAGCIKRFIPSEFGADPDRIQISDMDYNFYLRKAEIRRLVEAEGIPYTYISCNFLTSYLLPSLVQPGLKTPPRDKIRVFGDGNVKAVFVKEQDVAAFTI CSMDDPRTLNKVLYLRPPGNVYSMNELVEIWESKIGKKLEKIYVPEDELLMKIKETPYPDNMQMIFIYSAFVKGDHTYFDIDSHSGAEGTQLYPNVKYAT ISEFLETLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34540			NmrA-like negative transcripti...		Potri.009G118000 [exp]	0	1	PCBERp6
AT5G23230		NIC2	nicotinamidase 2 (.1)		Potri.003G003300 [exp]	4.00	0.8939
AT2G13690			PRLI-interacting factor, putat...		Potri.005G058700 [exp]	12.48	0.8713
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	12.68	0.8699
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.018G070000 [exp]	12.96	0.8443	Pt-SYNC3.2
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	14.49	0.8647
AT1G16790			ribosomal protein-related (.1)		Potri.010G254100 [exp]	15.58	0.8672
AT3G10210			SEC14 cytosolic factor family ...		Potri.006G043166 [exp]	15.96	0.8233
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.006G213600 [exp]	16.12	0.8735
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.002G042700 [exp]	25.09	0.8556
AT1G71730			unknown protein		Potri.005G198100 [exp]	25.69	0.8634

Compare expression of checked genes

Potri.009G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.