Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 501 / 0 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 454 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 439 / 3e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 412 / 1e-145 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 380 / 4e-133 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 293 / 5e-99 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 254 / 1e-83 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 244 / 1e-79 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118300 [exp] 513 / 0 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 494 / 7e-178 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 464 / 2e-166 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 461 / 6e-165 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 451 / 5e-161 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 360 / 1e-126 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 324 / 5e-111 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 285 / 9e-96 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133200 [exp] 285 / 1e-95 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042311 [exp] 504 / 0 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 503 / 0 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 498 / 8e-180 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 466 / 3e-167 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 460 / 1e-164 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 458 / 2e-161 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 394 / 5e-139 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 320 / 3e-109 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 280 / 2e-94 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10010403 [exp] 267 / 1e-88 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.009G118100.1 pacid=42772556 polypeptide=Potri.009G118100.1.p locus=Potri.009G118100 ID=Potri.009G118100.1.v4.1 annot-version=v4.1 ATGGCAAGTAAGATTCTGTTCATTGGAGGAACAGGATACATAGGAAAATTCATAGTGGAAGCTAGCGCAAAGGCAGGCCATCCTACTTTTGTTCTTGTTA GAGAGTCCACTCTCTCTAATCCTGCTAAATCCGTTGTGATCGATAACTTCAAGAATCTTGGGGTCAATTTCCTTATTGGAGATTTGTTTGATCATGAAAG TTTGGTGAAGGCTATAAAGCAAGTGGATGTTGTTATCTCTACAGTTGGTCATGCTCAGTTAGTTGAGCAAGACAGGATCATTGCTGCAATTAAAGAAGCT GGAAATGTTAAGAGATTTTTCCCATCAGAGTTTGGAAATGATGTGGATAGAGTGAATGCTGTTGAACCAGCAAAATCAGCGTTTGCAACGAAGGCGAACG TAAGAAGGGCTATTGAGGCTGAAGGGATTCCATACACCTATGTATCTTCCAATTTTTTTTCTGGCTATTTCCTTCTTTCTTTTAACCAGCCTGGAGCCAC AGCTCCTCCAAGAGATAAAGTTGTCATCTTGGGTGATGGAAATCCTAAAGCTGTTTTCAACAAAGAAGATGACATTGCCACCTATACTATCAAAGCAGTG GATGATCCCAGAACCTTGAACAAAATTCTCTACATTAAACCCCCAGCCAACACCATCTCATTCAATGATCTTGTGTCCTTGTGGGAGAAGAAGATTGGGA AAACCCTTGAAAGGATCTATGTTCCAGAGGAGCAACTTCTGAAAAATATCCAAGAAGCTTCGGTTCCAGTCAACGTGGTTTTGTCAATTGGGCACTCGGT GTTCGTAAAGGGAGATCACACCAACTTCGAGATTGAACCATCATTTGGTGTAGAGGCTTCGGAGCTTTACCCTGATGTCAAATACACTACTGTGGATGAA TACCTGAAGCAGTTTGTCTGA
AA sequence Show only first row Show all	>Potri.009G118100.1 pacid=42772556 polypeptide=Potri.009G118100.1.p locus=Potri.009G118100 ID=Potri.009G118100.1.v4.1 annot-version=v4.1 MASKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESTLSNPAKSVVIDNFKNLGVNFLIGDLFDHESLVKAIKQVDVVISTVGHAQLVEQDRIIAAIKEA GNVKRFFPSEFGNDVDRVNAVEPAKSAFATKANVRRAIEAEGIPYTYVSSNFFSGYFLLSFNQPGATAPPRDKVVILGDGNPKAVFNKEDDIATYTIKAV DDPRTLNKILYIKPPANTISFNDLVSLWEKKIGKTLERIYVPEEQLLKNIQEASVPVNVVLSIGHSVFVKGDHTNFEIEPSFGVEASELYPDVKYTTVDE YLKQFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39230			NmrA-like negative transcripti...		Potri.009G118100 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076600 [exp]	1.41	0.9189	Pt-CYP89.2
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G016800 [exp]	3.60	0.9310
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095100 [exp]	6.48	0.9036
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019300 [exp]	7.21	0.9093
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	17.66	0.8869
AT1G16260			Wall-associated kinase family ...		Potri.004G192500 [exp]	22.78	0.9163
AT3G50770		CML41	calmodulin-like 41 (.1)		Potri.005G128100 [exp]	23.49	0.9037
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Potri.001G303700 [exp]	28.37	0.8500
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.011G149700 [exp]	30.41	0.9062
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	34.17	0.8914

Compare expression of checked genes

Potri.009G118100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.