Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBER2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 488 / 6e-176 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 425 / 8e-151 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 419 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 383 / 5e-134 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 370 / 3e-129 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 294 / 3e-99 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 249 / 2e-81 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 238 / 6e-77 ATPRR2 pinoresinol reductase 2 (.1) AT5G18660 42 / 0.0005 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 41 / 0.0005 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G118100 [exp] 513 / 0 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 456 / 2e-162 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 444 / 2e-158 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 438 / 5e-156 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 423 / 6e-150 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 323 / 9e-112 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 315 / 2e-107 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 286 / 9e-96 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 273 / 5e-91 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042311 [exp] 475 / 2e-170 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 475 / 2e-170 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 464 / 4e-166 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 447 / 1e-159 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 437 / 1e-155 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 433 / 1e-151 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 370 / 8e-130 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 307 / 3e-104 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 263 / 2e-87 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10010403 [exp] 249 / 2e-81 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.009G118300.1 pacid=42771114 polypeptide=Potri.009G118300.1.p locus=Potri.009G118300 ID=Potri.009G118300.1.v4.1 annot-version=v4.1 ATGGCCGCGAAAAGTAAGATTCTGTTCATCGGGGGAACAGGATACATAGGAAAATTCATAGTGGAAGCAAGTGCCAAGGCAGGCCACCCTACTTTTGCTC TAGTTAGAAAGTCCAGTCTTTCTAGCCCTGCCAAATCTAATGTGATTAACAACTTCAAGAATCTTGGTGTCAATTTTCTCACTGGAGATTTGTTTGATCA TGAGAGTTTGGTGAAGGCGATAAAGCAAGTGGATGTGGTGATCTCTGCGGTTGGTCACTCTCAATTAGGTAACCAAGACAGGATCATTACTGCCATTAAA GAAGCTGGAAATGTTAAGAGATTTTTCCCGTCCGAATTTGGAAATGATGTTGATAGGGTGCATGCTGTTGAACCAGTAAAATCAGCATATGCTCACAAGG TTAAACTACGCAGAGTTCTTGAGGCCGGAGGAATTCCTTACACCATTGTGTCAAATAATTTTTTTGCTGGTTATTTCCTTCCAACTTTGAACCAGATTGG AGTTACAGCTGCTCCAAGAGATAAAGTTGTCATCTGGGGTGATGGAAATCCTAAAGCGGTGTTTAACGTGGAAAATGATATTGGCACCTATACTATCAGA GCAGTGGATGATCCAAGAGCCTTGAACAAAATCCTCTACATTAGACCCCCAGCCAACACCATCTCATTCAACGATCTTGTGTCTTTGTGGGAGAGGAAGA TTGGGAAAACCCTTGAAAAGATTTACATTCCCGAGGAGCAACTTTTGAAGAATATTCAAGAAGCTCCATTTCCAGACAGTGTGGAATTAGCACTTTTTCA CTGTGTCTTTGTGAAGGGAGATCACACCAACTTCAAGATCGAACCATCATTTGGTGTAGAGGCTTCTGAGCTTTACCCTGATGTCAAATACACTACCGTG GATGAATACCTTGATCAGTTTGTCTGA
AA sequence Show only first row Show all	>Potri.009G118300.1 pacid=42771114 polypeptide=Potri.009G118300.1.p locus=Potri.009G118300 ID=Potri.009G118300.1.v4.1 annot-version=v4.1 MAAKSKILFIGGTGYIGKFIVEASAKAGHPTFALVRKSSLSSPAKSNVINNFKNLGVNFLTGDLFDHESLVKAIKQVDVVISAVGHSQLGNQDRIITAIK EAGNVKRFFPSEFGNDVDRVHAVEPVKSAYAHKVKLRRVLEAGGIPYTIVSNNFFAGYFLPTLNQIGVTAAPRDKVVIWGDGNPKAVFNVENDIGTYTIR AVDDPRALNKILYIRPPANTISFNDLVSLWERKIGKTLEKIYIPEEQLLKNIQEAPFPDSVELALFHCVFVKGDHTNFKIEPSFGVEASELYPDVKYTTV DEYLDQFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39230			NmrA-like negative transcripti...		Potri.009G118300 [exp]	0	1	PCBER2
AT1G64160			Disease resistance-responsive ...		Potri.003G134800 [exp]	1.41	0.7926	DRR206.4
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	3.31	0.7599	COL3.2
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Potri.010G089800 [exp]	17.05	0.7718
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	23.66	0.7670
					Potri.008G030801 [exp]	27.56	0.6599
AT3G07870			F-box and associated interacti...		Potri.011G037312 [exp]	30.33	0.6250
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124500 [exp]	32.37	0.7716
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134700 [exp]	33.77	0.6296
AT1G03220			Eukaryotic aspartyl protease f...		Potri.002G054900 [exp]	34.89	0.7708
AT1G73325			Kunitz family trypsin and prot...		Potri.019G122100 [exp]	36.46	0.7710

Compare expression of checked genes

Potri.009G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.