Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25730 842 / 0 FtsJ-like methyltransferase family protein (.1) AT5G01230 137 / 1e-35 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G13830 75 / 8e-15 FtsJ-like methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056300 [exp] 134 / 2e-34 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G202200 [exp] 80 / 1e-16 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023555 [exp] 944 / 0 AT4G25730 941 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10040439 [exp] 919 / 0 AT4G25730 938 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10017186 [exp] 134 / 2e-34 AT5G01230 589 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021124 [exp] 118 / 5e-29 AT5G01230 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040283 [exp] 79 / 3e-16 AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) Lus10023402 [exp] 70 / 8e-13 AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01728 [poplar] [flax] FtsJ FtsJ-like methyltransferase CL0063 [poplar] [flax] PF07780 [poplar] [flax] Spb1_C Spb1 C-terminal domain CL0063 [poplar] [flax] PF11861 [poplar] [flax] DUF3381 Domain of unknown function (DUF3381)
Representative CDS sequence Show only first row Show all	>Potri.009G118400.1 pacid=42771054 polypeptide=Potri.009G118400.1.p locus=Potri.009G118400 ID=Potri.009G118400.1.v4.1 annot-version=v4.1 ATGGGAAAAGTAAAGGGAAAGCATCGTTTGGATAAATTTTACAAACTAGCCAAAGAACACGGCTATCGATCGCGTGCGTCATGGAAACTAATTCAACTAG ACACCAAGTTCAAGTTCCTCCAATCCTCACGCGCCGTGCTTGACCTTTGTGCTGCACCCGGCGGGTGGATGCAGGTGGCAGTGCAGCGCGTGCCTGTAAG AAGTCTTGTTTTAGGCATTGATTTAGTTAAAATAGCGCCTTTACGAGGGGCTGTCTCGATAGAGCAGGATATAACCAAGCCTGAGTGTAGAGCTAAGATT AAGAAAATCATGGGAGAACATGGAGTTAGAGCTTTTGATTTGGTTTTACATGATGGGTCACCTAATATTGGTGGTGCTTGGTCTCAAGAAGCTATGGCTC AAAATTCTCTGGTTATCGATTCTGTTAGATTGGCTACTCAGTTCTTGGCTCCTAAAGGAACTTTTGTTACTAAAGTTTTCAGGTCCCAAGATTATAGTTC TGTCATCTATTGTCTTAATCAGTTATTTGAGAAGGTCGAGGTGGATAAACCAGCAGCAAGTCGTTCAGCATCTGCTGAAATATTTGTTTTGGGTTTAAGG TACAAGGCCCCTGCTAAGATTGATCCTCGTCTTCTTGACATAAAGCATTTATTTCAGGGATCTGACGAACCCCAACGGAAGGTGGTGGATGTCCTTAGAG GAACAAAGCAGAAGCGGCATCGTGATGGGTATGAAGATGGAGAGTCCATTGTCAGAAAAGTTTCCTCAGCAGCTGATTTCATTTGGTCTGACAGCCCTCT TGAGATCCTTGGTTCCGTTACTTCAATAGCCTTTGATGATGAGGTTTCTTTACCCTTGCGTGATCATGATTTAACCACAGAAGAGGTTAAACATCTTTGT GATGATCTGCGTGTTTTGGGAAAACAAGACTTCAAGCATCTATTGAAGTGGCGGATGCAAATAAGAAAGGCCCTGTCTTCGTCTCAGAAAGCTAGTCCTT CTATTGGAAAAGGTGGTGAAGATGAAAAAGAGGAGGATGAAGATGATAGGTTGCTCAATGAAATGGAGGACCTGACAAATGCTATGGAGCGGAAGAAGAA ACGAGAAAAGAAACTTCTTGCAAAAAGACGAGCCAAGGATAAAGTACGGAAGGCAACCGGTGGAATGCAAATCGATGCAACGGCAGATGGTTACACTGAT CTTGAATTGTTCTCTCTTTCTTCCATCAAGGGAAAGAAAGATTTAGTAGCTGTTGATGCTGCTGACTATGATCATGAGAATGGTGGCTTAAGGGATGGTG AAAATGAAGAAACTGATGAGGAAAACCAGGAGCATTCACCCAGTGATGTAGATTCTGATGAGGAACGCAGAAGATTTGATGAACAAATGGAAGAGATCCT TGATCAGGCTTATGAAAGGTTTGTGACCAAAAGGGAAGGAAGTACCAAGCAGCGGAAACGTGCAAAGCAAGCCTATGCTGAACAACTTTTGGAGGGTGAT GGTGACAATGATATTGTTCATTCAGATTATGATTCAGATAAAGAAACGGGTGATCATGAAGCAAATCCTCTGATGGTACCATTCAATGATGGGGAAGTGC CAACTGAAGAAGAGATTACAAGGAAGTGGTTTGATCAGGATATCTTTGCCAAAGCTGCAGAGGATGGAGACTTGGAAACTGCAGAGGCCAGAAACTTGGA GAAGTATGAAAGTGAAGATGAAATGCTGGTAGATGGACAGGAGAAAGAAATTGCGACTCCAAAAAAGTCTGCAAAGAATGCTGCAGGGTCTGATCGTACT CAACCCCCATCTTCTACGGCAGAAAATGATTTTGAGATAGTCCCTGCTCCAGCTACAGATTCTAGTGATGATTCATCATCAGATGAATCTGAGGATGATG ATGTTGACTCAAAGGCTGAGATATTGGCTTGTGCTAAGAAGATGCTTAGAAAAAAGCGAAGGGAGCAGATGCTTGATGATTCCTACAACAAGTATATGTT TGATGATGAGGGCCTGCCTGGCTGGTTTGTGGAGGAAGAGAAGAGACACTGCCAGCCAATTAAGCCGGTTACCAAAGAGGAGATTGCTGCTATGCGAGCA CAATTCAAAGAAATAAATGCTCGGCCTGCTAAGAAAGTGGCTGAAGCCAAGGCTCGAAAGAAGAGGGTAGCTGCGAGGAAGCTTGAGAAGGTGCGCAAGA AGGCAAATGATATATCAAAGCAGACGGAGATCTCTGATCACTCAAAGGGCAGGTTAATTGAGCAACTATACAAAAAGGCTGCACCAAAAAGGCCTAAGAA GGAATATGTGGTTGCAAAGAAAGGAGTTACAGTCAAGGTTGGCAAGGGGAAAGTCCTTGTTGATCGGCGGATGAAAAAGGATGCGCGTGGTATGGGAAAG CCAGGAAAAGGTGGTTTGAAGAAGGGTAAGAATGCAAAGGGCCAGAGAGGTAAAGGGCCTGCAAAGACTTCAGCTAAGGGAAATAAGGGAAAGAAAGGAA AAAAGATGGGCATGCATGAATAA
AA sequence Show only first row Show all	>Potri.009G118400.1 pacid=42771054 polypeptide=Potri.009G118400.1.p locus=Potri.009G118400 ID=Potri.009G118400.1.v4.1 annot-version=v4.1 MGKVKGKHRLDKFYKLAKEHGYRSRASWKLIQLDTKFKFLQSSRAVLDLCAAPGGWMQVAVQRVPVRSLVLGIDLVKIAPLRGAVSIEQDITKPECRAKI KKIMGEHGVRAFDLVLHDGSPNIGGAWSQEAMAQNSLVIDSVRLATQFLAPKGTFVTKVFRSQDYSSVIYCLNQLFEKVEVDKPAASRSASAEIFVLGLR YKAPAKIDPRLLDIKHLFQGSDEPQRKVVDVLRGTKQKRHRDGYEDGESIVRKVSSAADFIWSDSPLEILGSVTSIAFDDEVSLPLRDHDLTTEEVKHLC DDLRVLGKQDFKHLLKWRMQIRKALSSSQKASPSIGKGGEDEKEEDEDDRLLNEMEDLTNAMERKKKREKKLLAKRRAKDKVRKATGGMQIDATADGYTD LELFSLSSIKGKKDLVAVDAADYDHENGGLRDGENEETDEENQEHSPSDVDSDEERRRFDEQMEEILDQAYERFVTKREGSTKQRKRAKQAYAEQLLEGD GDNDIVHSDYDSDKETGDHEANPLMVPFNDGEVPTEEEITRKWFDQDIFAKAAEDGDLETAEARNLEKYESEDEMLVDGQEKEIATPKKSAKNAAGSDRT QPPSSTAENDFEIVPAPATDSSDDSSSDESEDDDVDSKAEILACAKKMLRKKRREQMLDDSYNKYMFDDEGLPGWFVEEEKRHCQPIKPVTKEEIAAMRA QFKEINARPAKKVAEAKARKKRVAARKLEKVRKKANDISKQTEISDHSKGRLIEQLYKKAAPKRPKKEYVVAKKGVTVKVGKGKVLVDRRMKKDARGMGK PGKGGLKKGKNAKGQRGKGPAKTSAKGNKGKKGKKMGMHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25730			FtsJ-like methyltransferase fa...		Potri.009G118400 [exp]	0	1
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	2.00	0.8743
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	2.82	0.8585
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	3.74	0.8621
AT5G48240			unknown protein		Potri.014G170500 [exp]	4.00	0.8470
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	5.74	0.8591
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	5.91	0.8505
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	7.93	0.8483
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	8.48	0.8487
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.004G018000 [exp]	11.22	0.8195
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	11.22	0.8427

Compare expression of checked genes

Potri.009G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.