Plant FIBer expression Database

Potri.009G118651 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16365 109 / 4e-25 F-box family protein (.1.2.3.4)
AT4G34550 69 / 2e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G157000
[exp]
916 / 0 AT2G16365 105 / 7e-24 F-box family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023554
[exp]
298 / 6e-91 AT2G16365 132 / 5e-33 F-box family protein (.1.2.3.4)
Lus10040438
[exp]
289 / 1e-87 AT2G16365 128 / 2e-31 F-box family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.009G118651.3 pacid=42771460 polypeptide=Potri.009G118651.3.p locus=Potri.009G118651 ID=Potri.009G118651.3.v4.1 annot-version=v4.1
ATGTCTCATTGGACGCAAACTAGTTGCAGGAAAGAAAATGAAGCTCCAAAGCGATTAGGTGATGATTCTGGGGAAGTCAGTCATGGTAGAAAACATCATC
AGTCACTTAGTGGGCCGGAGATGGAGACATGTAGTTCTAAACTTGTCGGGGGGCTTGGAGAATTAATTGAGGGGAAAGGGATCGACTTCATGAAAGAAAA
CCGTACTATGAGTTCAAAAAAACTGAGGAATGAAGTGTTTGAGGGCCAGTCTTCTTTTCCGGTGTTCAAACCTTCTCAAGATAGGGATAGTGTTTTATCT
CTGAAGAATGGTGTTTCTCTTGGTAGAACTGCGGATTATTTATCCTTAATGCCCGGACAGGCTCCTCCTGAGGTAGAAATTCAGAGAAGAAAACCCCAGT
TTCAGACAGAAGATATCAACTTGGCTCCAGAGAAGCAGGTGAAGTCTAATAGTTTGCTAGAAAGGAGTAGCAGAGTCGTTTCGACACCTATTCAGGATGA
TTTTGTAAGGTCGACTGCAGTTACTGTGCCGTGTGAGTTTGAAGGCAGAAGGGCTCCAATTCAGTCCTTTTTCTATGGGCTTGATCACATTAATGAACCA
GGCTGTGCGTCTTTGGTTCATAAGAAGAAAATGAATAAAAATGATGGTCTTCTCTTTTGTGATCCCTCAACAAGCAATAATCAGCTAAGAGATTTTTTCG
GTAAGTCATTTCAGACGGTGCCAAATCATTCTGATTTTGAATTGTTTTCTAGCCAGATCAGTCCCAGAGATAATATCAAATTAGAAAAATTGTATCATGG
ATCTTATGCACTACCAAGTCTTCCCTCTGTTCATGATGTGGGGACTATGAGAATGCGTGCTACAATAGACTCCACAGAAGAATTTTCTAGAGGTCCTCCG
AAGTTTACCCAGACTACTCACCGCTTTTTCATCACAAAAAAGACTGACGTAAACTTACCTGATGGTGCCCAGATGTTTAGAGAGTCAGCAACATCCACTG
AATTTAAGGGGAAAATGGTGACTGAACTCCTTGCTTTATCTCCGGATTTTGGCTTCCATGTCAAGCAAGGAGAGCAGATGCAACCTCTGGGAAGCTCCAC
AGAGAGTGAAGGAAAAGAAAACACTGGGAATGTCAAGGCTTCTGCAGTTGTTAAAGAGAATGATTCATCAGCTGATGGAATAGAAAACACTGAGAATGTC
AAGACTTCTGCAGTCGATGAAGAGAATGATTCATCAGCTGATGGAATAGAAAACACTGAGAATGTCAAGACTTCTGCAGTCGATGAAGAGAATGATTTAT
CAGCTGAAACTGATGCCATGGATATTCACGCTTTCTGTGAGAATCATATATCTGGTGTGGCATCGTTGCAATCACATAAGGACATCAGCGAGGGCCAAAA
GTCACCAGCTTCTCAAGCTGGAGTGCCTCCAGTCAGACAAGAAACCAAGGGCAGACAGATGAACACCGAATTACCTGATATTAAGCAAGAACTTCCTGTA
CTTCCAGGCGTGGCAAGGTCACCAGATGACATGGAGACAAGCACCTCAAGAACCCAGAGTTTGGATGTGGAATGCTTCCTTCCCCATCCTGAGCATTCTA
CAAATTCAAAATCCAGTGATTGCCATAACGCTCCATCGAGATTGGACCCATACAGCAGATGGGTTAAACGTCTCAAACCAAGTGCTTCAGATTCTTTTGG
TTATGGTACTAAAAGTTCAAAAGTTGAAGAAGCATCATCCCGTCGGAAATTTAATAAGTTGATCAGCAAAATGCCAAGACATAGGAAAAGTATTTCAGAA
CCAAAGAAAAGCAAGTCTTGTGGTAAAGAGCAGGCGGTGACAGATCAGACTGCAGAGTCACCTAGGAACGCTAAATCCTATTCCACTTACTCGGCAAGGA
AAAGTCAAGAAATAACACTCTCTCATGCTTGGGTTCAGAGGTGGTGTCATAAGCCATCTGCATCTCCAAAAAAGAAGCCCAAGGCTGTGGTAGTTTCTGA
GCCAGAATGTTCAGTGGCAACACTAGACTTGCAGAAGAAGCAGTTTGCTAGCATTGCTGCTATGGCTCTGATGGGGAAGGCCATGAATGGTTTTCGTCCA
TGTGAATTCAGAAAACGGGGGTCTTCTGTCATCTGGAATACCAGGGGATTCAGAGATGAGCTTTCCTGA
AA sequence
>Potri.009G118651.3 pacid=42771460 polypeptide=Potri.009G118651.3.p locus=Potri.009G118651 ID=Potri.009G118651.3.v4.1 annot-version=v4.1
MSHWTQTSCRKENEAPKRLGDDSGEVSHGRKHHQSLSGPEMETCSSKLVGGLGELIEGKGIDFMKENRTMSSKKLRNEVFEGQSSFPVFKPSQDRDSVLS
LKNGVSLGRTADYLSLMPGQAPPEVEIQRRKPQFQTEDINLAPEKQVKSNSLLERSSRVVSTPIQDDFVRSTAVTVPCEFEGRRAPIQSFFYGLDHINEP
GCASLVHKKKMNKNDGLLFCDPSTSNNQLRDFFGKSFQTVPNHSDFELFSSQISPRDNIKLEKLYHGSYALPSLPSVHDVGTMRMRATIDSTEEFSRGPP
KFTQTTHRFFITKKTDVNLPDGAQMFRESATSTEFKGKMVTELLALSPDFGFHVKQGEQMQPLGSSTESEGKENTGNVKASAVVKENDSSADGIENTENV
KTSAVDEENDSSADGIENTENVKTSAVDEENDLSAETDAMDIHAFCENHISGVASLQSHKDISEGQKSPASQAGVPPVRQETKGRQMNTELPDIKQELPV
LPGVARSPDDMETSTSRTQSLDVECFLPHPEHSTNSKSSDCHNAPSRLDPYSRWVKRLKPSASDSFGYGTKSSKVEEASSRRKFNKLISKMPRHRKSISE
PKKSKSCGKEQAVTDQTAESPRNAKSYSTYSARKSQEITLSHAWVQRWCHKPSASPKKKPKAVVVSEPECSVATLDLQKKQFASIAAMALMGKAMNGFRP
CEFRKRGSSVIWNTRGFRDELS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16365 F-box family protein (.1.2.3.4... Potri.009G118651
[exp]
0 1
AT3G27010 TCP ATTCP20, PCF1, ... ARABIDOPSIS THALIANA TEOSINTE ... Potri.001G327100
[exp]
2.23 0.8403 TCP20.1
AT4G28910 NINJA novel interactor of JAZ (.1.2.... Potri.006G162900
[exp]
7.21 0.7842
Potri.013G062401
[exp]
7.41 0.7545
AT3G17860 ZIM TIFY6B, JAI3, J... JASMONATE-INSENSITIVE 3, jasmo... Potri.008G133400
[exp]
9.74 0.7379
AT4G00355 ATI2 ATG8-interacting protein 2, un... Potri.002G160700
[exp]
13.03 0.7559
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.001G122700
[exp]
13.71 0.7822
AT3G10250 Plant protein 1589 of unknown ... Potri.016G038100
[exp]
13.96 0.7659
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.002G072900
[exp]
16.97 0.7650 SEU.1
AT1G77230 Tetratricopeptide repeat (TPR)... Potri.002G076700
[exp]
16.97 0.7379
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Potri.016G122801
[exp]
17.66 0.7528

Potri.009G118651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.