Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34560 90 / 8e-22 unknown protein AT2G21560 72 / 1e-14 unknown protein AT5G66440 69 / 7e-14 unknown protein AT4G39190 66 / 1e-12 unknown protein AT1G27670 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157300 [exp] 314 / 1e-109 AT4G34560 107 / 9e-29 unknown protein Potri.007G021500 [exp] 83 / 9e-19 AT5G66440 147 / 6e-43 unknown protein Potri.005G120300 [exp] 80 / 9e-18 AT5G66440 134 / 4e-38 unknown protein Potri.003G168200 [exp] 45 / 1e-05 AT5G50610 / unknown protein Potri.015G099800 [exp] 44 / 2e-05 AT5G50610 / unknown protein Potri.012G101800 [exp] 39 / 0.0008 AT5G50710 54 / 5e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040435 [exp] 147 / 5e-44 AT5G66440 104 / 3e-27 unknown protein Lus10023551 [exp] 145 / 6e-43 AT5G66440 95 / 2e-23 unknown protein Lus10042306 [exp] 123 / 2e-34 AT5G66440 97 / 2e-24 unknown protein Lus10026353 [exp] 109 / 4e-29 AT4G34560 101 / 2e-26 unknown protein Lus10028329 [exp] 66 / 1e-12 AT5G66440 117 / 1e-31 unknown protein Lus10041775 [exp] 63 / 1e-11 AT5G66440 123 / 1e-33 unknown protein Lus10014287 [exp] 41 / 0.0002 AT5G66440 79 / 4e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14364 [poplar] [flax] DUF4408 Domain of unknown function (DUF4408)
Representative CDS sequence Show only first row Show all	>Potri.009G119000.1 pacid=42772861 polypeptide=Potri.009G119000.1.p locus=Potri.009G119000 ID=Potri.009G119000.1.v4.1 annot-version=v4.1 ATGGATTCATTCAACATCACCAGCATCAAGATTGAGAAGGCGAAAGCGATCAAGAAGCATAGGAAGATTCGAAAGATTGCAAGTTTGTTCAGGTTAATAG AAATAGGTGTTGTTCTAGCTTTGATTTCCAGGTTTTCCATTCAACTCCCGGTTGCTGTCAAGAACTCTAGTGAGTATTTCAAGGACTTAACAGTAATCCT TGTAAGTCCTCGGTTTGTGTTCGTTCTTGGTAACATGATAGTCATCACTCTCTTTGCAAAGTCAGGCCAGTTTTCAGGTCAAGATTCTAATGGGAAGAAT CCAAGCACTGATCTTTATGACGAGTTTGTAGAGAAGAGTGAAAAGAGTCAGGAAACTCATCAATATGAAGCTGAATGCAGAGAGAAACAGGTCACTTATG TTGAGTACAAAGTCACTGAGGATACTTCAACTTCTTTAGAACGAAAGAAATATCACAGGAGTGAATCAGAGAAACTGGAGAGGCCAGATAGTAGCCGGGA ACTGAGGAGGTCAGCGACTGATAAATGCAGGAAAACCATTGATTCTGCTAAGGAATCGGAGAAAAGTTCATCTCCCAAGGATAAAATGAGCAACGATGAG TTTCGGAGCACGATCGAGGCTTTCATTGCCAGGCAAAAGAGGTTTCTAATAGACGAAGAGAACTCTTATATTTTATAG
AA sequence Show only first row Show all	>Potri.009G119000.1 pacid=42772861 polypeptide=Potri.009G119000.1.p locus=Potri.009G119000 ID=Potri.009G119000.1.v4.1 annot-version=v4.1 MDSFNITSIKIEKAKAIKKHRKIRKIASLFRLIEIGVVLALISRFSIQLPVAVKNSSEYFKDLTVILVSPRFVFVLGNMIVITLFAKSGQFSGQDSNGKN PSTDLYDEFVEKSEKSQETHQYEAECREKQVTYVEYKVTEDTSTSLERKKYHRSESEKLERPDSSRELRRSATDKCRKTIDSAKESEKSSSPKDKMSNDE FRSTIEAFIARQKRFLIDEENSYIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34560			unknown protein		Potri.009G119000 [exp]	0	1
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.017G100500 [exp]	4.58	0.9005
AT5G27690			Heavy metal transport/detoxifi...		Potri.005G026100 [exp]	8.94	0.8633
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G206400 [exp]	14.56	0.8721
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.016G113800 [exp]	15.62	0.7764
					Potri.018G104500 [exp]	16.15	0.8664
AT5G35735			Auxin-responsive family protei...		Potri.004G006700 [exp]	25.39	0.8422
AT2G34540			unknown protein		Potri.004G064900 [exp]	26.00	0.8634
AT1G54400			HSP20-like chaperones superfam...		Potri.019G037700 [exp]	30.59	0.8622
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	33.76	0.8519
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	34.19	0.8534

Compare expression of checked genes

Potri.009G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.