Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11880 815 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT3G14390 810 / 0 Pyridoxal-dependent decarboxylase family protein (.1) AT4G34710 44 / 0.0003 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157500 [exp] 905 / 0 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.005G246300 [exp] 67 / 9e-12 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1) Potri.002G015800 [exp] 58 / 6e-09 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042305 [exp] 857 / 0 AT5G11880 806 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10040433 [exp] 840 / 0 AT5G11880 813 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10023548 [exp] 835 / 0 AT5G11880 809 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10026354 [exp] 209 / 1e-66 AT5G11880 210 / 2e-67 Pyridoxal-dependent decarboxylase family protein (.1) Lus10004154 [exp] 56 / 3e-08 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00278 [poplar] [flax] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain CL0036 [poplar] [flax] TIM_barrel PF01168 [poplar] [flax] Ala_racemase_N Alanine racemase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G119300.1 pacid=42772468 polypeptide=Potri.009G119300.1.p locus=Potri.009G119300 ID=Potri.009G119300.1.v4.1 annot-version=v4.1 ATGGCGGCTGCTACTAATTTCTCTCACTCGCCCTTCATTTCTAAAACCCTAACTCACTCTCTAAACCATAACCCACTTCCCAAAAACCCAACTTTGCCTT TCAAACTCTCAAAAAGCTACTCTCTCAAGGCAGTTATATCCCAGCAAAACCCTGCTACAGCCACAACACAGAAAACGCAGTTTAAGCATTGTTTTACAAA ATCCCAAGATGGATTTCTCTACTGTGAGAGCCTTAAGGTTCAGGAGATTATGGAGAGTGTTGAGAAGAGACCATTTTATTTGTACAGTAAGCCACAGATT ACTAGAAATGTTGAGGCTTATAAGGATGCTTTACAAGGATTGAGTTCTATCATTGGGTATGCTATTAAGGCTAATAATAACTTGAAGATTTTGGAGCATT TGAGAGGGTTGGGTTGTGGTGCTGTTTTGGTTAGTGGTAACGAGCTTAGGCTGGCTCTCCGTGCCGGTTTCGATCCCACGAGGTGTATTTTTAATGGAAA TGGGAAGCTGTTGGATGATTTGGTTTTAGCTGCTCAAGAAGGTGTTTTTGTTAACGTGGATAGTGAATTCGATTTGGAAAATATTGTGGCTGCTGCTAGA ATTGCTGGCAAGAAGGTTAATGTTCTACTTCGGATCAACCCAGATGTTGACCCTCAGGTCCATCCTTATGTTGCTACTGGGAATAAGAACTCGAAATTTG GTATTAGAAATGAGAAGCTGCAATGGTTTCTGGATGCTGTGAAGGCACACCCTAATGAGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGATCAACCAT CACCAAGGTGGACATATTCAGAGATGCTGCAGCTCTTATGGTTAACTACATTGATGAAATCCGAGCCCAGGGATTTGAAGTTGATTACTTGAACATTGGA GGTGGTTTGGGTATAGATTATTATCATTCTGGTGCTGTCCTTCCTACTCCAAGAGATCTCATTGACACTGTTCGTGAACTGGTGCTCTCACGAGATCTCA ATCTCATTATTGAACCTGGGAGATCTCTCATTGCAAATACTTGCTGCCTGGTGAACAGGGTCACTGGGGTTAAAACTAATGGAACAAAAAATTTTGTTGT GATAGATGGAAGCATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTATCAACACATAGAGCTTGTTTCTCCTGCGTCACCCAGTGCGGAAGTTTCA ACTTTTGATGTGGTTGGTCCTGTCTGTGAGTCAGCAGATTTCCTGGGAAAGGATAGAGAACTTCCAACTCCTGCTAAGGGAGCTGGTTTGGTTGTTCATG ATGCAGGTGCTTACTGTATGAGCATGGCGTCGACATACAATCTCAAGATGCGCCCTCCTGAGTACTGGGTTGAAGATGATGGATCAGTCTCCAAAATTCG ACAGGGAGAGACATTTGAAGACCATATTCGGTTCTTCGAGGGTCTTTGA
AA sequence Show only first row Show all	>Potri.009G119300.1 pacid=42772468 polypeptide=Potri.009G119300.1.p locus=Potri.009G119300 ID=Potri.009G119300.1.v4.1 annot-version=v4.1 MAAATNFSHSPFISKTLTHSLNHNPLPKNPTLPFKLSKSYSLKAVISQQNPATATTQKTQFKHCFTKSQDGFLYCESLKVQEIMESVEKRPFYLYSKPQI TRNVEAYKDALQGLSSIIGYAIKANNNLKILEHLRGLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLDDLVLAAQEGVFVNVDSEFDLENIVAAAR IAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAALMVNYIDEIRAQGFEVDYLNIG GGLGIDYYHSGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPASPSAEVS TFDVVGPVCESADFLGKDRELPTPAKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRQGETFEDHIRFFEGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	1.00	0.8886
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.012G006700 [exp]	1.73	0.8544
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	2.23	0.8345	Pt-RPL3.3
AT5G60390			GTP binding Elongation factor ...		Potri.010G218700 [exp]	2.82	0.8691
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.006G078200 [exp]	3.46	0.8176	Pt-ACCC.2
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Potri.002G198500 [exp]	4.58	0.8158
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	6.32	0.8404
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	6.63	0.7930
AT5G48480			Lactoylglutathione lyase / gly...		Potri.002G251200 [exp]	8.48	0.7668
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	8.83	0.7852

Compare expression of checked genes

Potri.009G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.