Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21540 729 / 0 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 667 / 0 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 666 / 0 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 642 / 0 ATSFH12 SEC14-like 12 (.1) AT2G18180 642 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 605 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 596 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 595 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 546 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 515 / 3e-177 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G157600 [exp] 1036 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 720 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 698 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 618 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 616 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 577 / 0 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 555 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 424 / 5e-141 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 415 / 6e-138 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040432 [exp] 742 / 0 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 728 / 0 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10042303 [exp] 655 / 0 AT2G21540 598 / 0.0 SEC14-like 3 (.1.2.3) Lus10026355 [exp] 654 / 0 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 627 / 0 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 605 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040431 [exp] 599 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10041779 [exp] 595 / 0 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10026356 [exp] 593 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 592 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G119400.2 pacid=42771846 polypeptide=Potri.009G119400.2.p locus=Potri.009G119400 ID=Potri.009G119400.2.v4.1 annot-version=v4.1 ATGGCTGATACTCTGTCTGGACCACTTGATCCACCTATCAAAGGGGGTCATGAAAAATCCGATACTGAACACTCTGAGGATGAGAGGAAGACAAAGCTTG GATCATTGAAGAAGAAAGCAATTAGTGCCTCGAACAAGTTCAGGAATTCCTTGACAAAGAAAGGACGCAGACACAGTAGAGTAATGTCTATTTCAATTGA GGATGACCTTGATGCTGAGGAATTACAGGCAGTGGATGCGTTTCGCCAAGCACTTATTTTGGATGAGCTACTACCCTCTAAGCATGATGATCACCATATG ATGCTAAGATTTTTAAGGGCCAGGAAATTTGATGTGGAGAAGGCAAAGCAAATGTGGTCTGATATGCTCAAATGGAGGAAGGAATTCGGCGCTGACACAA TCATGGAGGAATTTGAATTCAAGGAAATAGATGAAGTCTTGAAATACTATCCACAAGGGTATCATGGAGTTGATAAGGAAGGAAGACCAGTTTACATTGA AAGACTGGGTGAAGTTGATGCTAACAAGCTGGTACAAGTCACAACATTGGATCGGTATATGAAATACCACGTGCAAGAGTTTGAGAAAACCTTCAATATC AAGTTTCCAGCCTGTTCGATTGCAGCGAAGAAGCATATTGATCAGAGCACCACTATTTTGGATGTGCAAGGAGTGGGGCTTAAACAATTCACCAAAACTG CAAGGGAACTTATTAGCCACATTTCAAAGATTGATGGTGACAATTACCCTGAGACCTTAAATCGGATGTTCATCATTAATGGTGGTCCTGGATTCAGGCT TTTGTGGAGCACAGTTAAACAGTTCATTGACCCCAAGACTGCCCAAAAAATCCATTTTCTGGGTAACAAATACCAGAGCAAGTTGCTTGAAGCAATTGAT GCTAGTGAATTGCCGGAGATTTTTGGTGGTACTTGCACTTGTGCCAATAAGGGTGGCTGTATGCGTTCTGATAAGGGTCCATGGAATGATACGGACATAC TAAAGATGGTCCAAAATGGTGAAGCCAAATGCCACAGGAGAACTTTTTCAGGAATTCACGAGAAGGCAATCTCTGAAGATAATCAGCCATGCACCAAGAC AAACGCTTCTTTCAGCAAAGAAGCAGCTGCTGATGCTGCTGATTATGGACATCCAAGGAATCACGGGGAACATCAGATTCTTTCTCCAGTTCCAGAATCT CCCTTGAGCAAAGGGTACAAAAGTGACCAAGAGTATGATTACTCCATTCCAATGGTTGAAAAGACCATTGATGCTGCTTGGCCTACACGGCAGAATAATA GATATGACCTCTCTAAAGAGTCTCACCTAGAGCATGATGTTTACAAGGCTCAAAGACGGAGTGGTCAGATAGTAAACGGGATAATGGCCGTCGTGATGGG AATTGTCACCATGGTTCGCATATCACGCAACATGCCTAGAAAACTTGCTGAGGCTGCTGTTTACGGTAGTCAAGTTTATGCTAATGAAATGGCTAAAAGC CATGCATTGCCAGCACCATCCATCTCTACTTCTGAATACAAGAACATGATGTCGCGCATGGCCGAAATGGAAGAGAAGCTGAATGTTCTCAGCTCCAAAC CTCAAGTCATGCTCCCTGAGAAAGAGGAAATGCTGAATGCTTCTATAAGGCGAGCCGATTCTCTTGAGCAAGAGCTATCAATAGCCAAGAAGGCACTTGA GGATGCCCTTGCTAAACAGCAGGAACTCCTAGCCTACATTGACAAGAAAAAGAAGAAAAAGAAAATTTTTGGATTTGAAATTAAGAGTTCATGCAGATGA
AA sequence Show only first row Show all	>Potri.009G119400.2 pacid=42771846 polypeptide=Potri.009G119400.2.p locus=Potri.009G119400 ID=Potri.009G119400.2.v4.1 annot-version=v4.1 MADTLSGPLDPPIKGGHEKSDTEHSEDERKTKLGSLKKKAISASNKFRNSLTKKGRRHSRVMSISIEDDLDAEELQAVDAFRQALILDELLPSKHDDHHM MLRFLRARKFDVEKAKQMWSDMLKWRKEFGADTIMEEFEFKEIDEVLKYYPQGYHGVDKEGRPVYIERLGEVDANKLVQVTTLDRYMKYHVQEFEKTFNI KFPACSIAAKKHIDQSTTILDVQGVGLKQFTKTARELISHISKIDGDNYPETLNRMFIINGGPGFRLLWSTVKQFIDPKTAQKIHFLGNKYQSKLLEAID ASELPEIFGGTCTCANKGGCMRSDKGPWNDTDILKMVQNGEAKCHRRTFSGIHEKAISEDNQPCTKTNASFSKEAAADAADYGHPRNHGEHQILSPVPES PLSKGYKSDQEYDYSIPMVEKTIDAAWPTRQNNRYDLSKESHLEHDVYKAQRRSGQIVNGIMAVVMGIVTMVRISRNMPRKLAEAAVYGSQVYANEMAKS HALPAPSISTSEYKNMMSRMAEMEEKLNVLSSKPQVMLPEKEEMLNASIRRADSLEQELSIAKKALEDALAKQQELLAYIDKKKKKKKIFGFEIKSSCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.009G119400 [exp]	0	1
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.003G081066 [exp]	18.38	0.9302
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.017G044200 [exp]	22.97	0.8240
AT5G05800			unknown protein		Potri.007G118701 [exp]	23.36	0.9295
					Potri.006G128300 [exp]	29.24	0.9292
AT5G05800			unknown protein		Potri.001G339400 [exp]	34.79	0.9287
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	36.22	0.9271
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	37.58	0.9270
AT3G09925			Pollen Ole e 1 allergen and ex...		Potri.006G119100 [exp]	38.24	0.9264
AT2G04100			MATE efflux family protein (.1...		Potri.017G120500 [exp]	40.00	0.9265
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	46.87	0.9264

Compare expression of checked genes

Potri.009G119400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.