Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39150 511 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 488 / 8e-175 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 357 / 4e-122 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 345 / 2e-117 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 332 / 1e-112 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G48030 72 / 9e-14 GFA2 gametophytic factor 2 (.1) AT1G59980 72 / 1e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT4G39960 71 / 1e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G71000 66 / 9e-13 Chaperone DnaJ-domain superfamily protein (.1) AT5G01390 67 / 1e-12 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158300 [exp] 556 / 0 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.002G000300 [exp] 369 / 1e-126 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G260400 [exp] 367 / 6e-126 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 333 / 6e-113 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 323 / 6e-109 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G065500 [exp] 78 / 1e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 77 / 1e-15 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.018G034600 [exp] 74 / 2e-14 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 73 / 5e-14 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017472 [exp] 527 / 0 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 526 / 0 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 520 / 0 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 515 / 0 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013198 [exp] 357 / 6e-122 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 352 / 5e-119 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 323 / 1e-108 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029744 [exp] 283 / 4e-93 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013981 [exp] 74 / 2e-14 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10035855 [exp] 72 / 9e-14 AT5G48030 524 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14308 [poplar] [flax] DnaJ-X X-domain of DnaJ-containing
Representative CDS sequence Show only first row Show all	>Potri.009G119800.1 pacid=42772776 polypeptide=Potri.009G119800.1.p locus=Potri.009G119800 ID=Potri.009G119800.1.v4.1 annot-version=v4.1 ATGGTGAAAGATACAGCTTTTTATGACATTTTGGGGGTTAGTGTCGATGCGTCATCGGCAGAGATCAAGAAGGCTTACTATCTCAAGGCAAAAGTAGTTC ATCCAGATAAAAACCCCGGTGATCCAAAAGCTGCAGATAATTTTCAGATACTTGGTGAAGCATACCAGATCTTAAGTGATCCTCAGAAACGTGAAGGATA CGACAAGTATGGAAAGGAAGGAATAACAGAGGAAATCATGTTGGATCCTTCAGCTGTCTTTGGAATGCTATTTGGGAGTGAATTATTTGAAGATTATGTT GGTCAACTTGCACTGGCTACATTATCATCTTTTGAAAATGAAGACGACATACAGGACAAGGAAATGCAACAGCAGAGAAATCAAGAGAAGATGAAGGTGC TGCAGAAAGAGAGAGACGAAAAGCTAATAACAAATCTCAAAATTCGCCTTGAAACATTTGTTGAAGGCCAGGAGAATGAGTTTACAAATTGGGCCCAGTC AGAAGCACGCCGCCTCTCAACAGCTGCATTTGGTGAGGCTATGCTGCACACCATTGGTTATATCTACACGAGGAAAGCTGCTAGGGAGCTTGGAAAGGAC AGACGGTATATGAAGGTACCATTTTTAGCAGAATGGGTACGGGATAAAGGACACCTGATGAAATCACAAGTAATGGCTGCTTCAGGTGCTGTTTCCTTAA TTCAAATACGGGATGAGTTAAAGAAGTTGAATGGAGTAGAAAACCAAGAAGAGAGCATGCAGAAAATCCTTGAAGATAAGAAGGATTCTATGCTTCAATC ACTTTGGCAGATCAATGTGCTTGATATTGAGAGTACTTTATCACGTGTGTGCCAAGCAGTACTGAAAGACCCTATTGTGTCCCGTGATGTCCTGAAGTCA CGGGCTAAAGGATTGAAAAAACTTGGAACAATCTTCCAAGGTGCCAAAGCTGCTTACAGTCGAGCCAACAGCTTGCGCCATGAAGATGACAAGGCAATAA CTACCGGTTCAACATCATAG
AA sequence Show only first row Show all	>Potri.009G119800.1 pacid=42772776 polypeptide=Potri.009G119800.1.p locus=Potri.009G119800 ID=Potri.009G119800.1.v4.1 annot-version=v4.1 MVKDTAFYDILGVSVDASSAEIKKAYYLKAKVVHPDKNPGDPKAADNFQILGEAYQILSDPQKREGYDKYGKEGITEEIMLDPSAVFGMLFGSELFEDYV GQLALATLSSFENEDDIQDKEMQQQRNQEKMKVLQKERDEKLITNLKIRLETFVEGQENEFTNWAQSEARRLSTAAFGEAMLHTIGYIYTRKAARELGKD RRYMKVPFLAEWVRDKGHLMKSQVMAASGAVSLIQIRDELKKLNGVENQEESMQKILEDKKDSMLQSLWQINVLDIESTLSRVCQAVLKDPIVSRDVLKS RAKGLKKLGTIFQGAKAAYSRANSLRHEDDKAITTGSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.009G119800 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	13.78	0.8764	Pt-ACCAL.3
AT4G32530			ATPase, F0/V0 complex, subunit...		Potri.006G248700 [exp]	17.74	0.8665
AT5G53340			Galactosyltransferase family p...		Potri.015G023700 [exp]	22.62	0.8759
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	23.81	0.8752
AT1G51650			ATP synthase epsilon chain, mi...		Potri.008G008900 [exp]	23.91	0.8641
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	28.98	0.8742
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	32.86	0.8556	Pt-ADF1.1
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	33.76	0.8708
AT2G45060			Uncharacterised conserved prot...		Potri.002G142900 [exp]	35.39	0.8708
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.005G033400 [exp]	37.04	0.8595	Pt-ANP1.2

Compare expression of checked genes

Potri.009G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.