Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39140 339 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) AT2G21500 298 / 2e-97 RING/U-box superfamily protein (.1.2) AT1G19680 200 / 2e-59 RING/U-box superfamily protein (.1) AT1G75400 188 / 1e-54 RING/U-box superfamily protein (.1) AT5G18260 77 / 3e-15 RING/U-box superfamily protein (.1) AT1G14180 77 / 3e-15 RING/U-box superfamily protein (.1.2) AT5G57820 42 / 0.0003 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158400 [exp] 692 / 0 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.002G031600 [exp] 282 / 8e-91 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.005G231500 [exp] 280 / 4e-90 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 86 / 6e-18 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 82 / 7e-17 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.018G119600 [exp] 67 / 3e-12 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G063100 [exp] 66 / 5e-12 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.006G180600 [exp] 51 / 1e-06 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017978 [exp] 434 / 4e-150 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 429 / 3e-148 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10002639 [exp] 76 / 2e-14 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10020256 [exp] 75 / 2e-14 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10008046 [exp] 71 / 6e-14 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10036764 [exp] 69 / 6e-13 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10037162 [exp] 59 / 3e-09 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.009G120000.2 pacid=42771639 polypeptide=Potri.009G120000.2.p locus=Potri.009G120000 ID=Potri.009G120000.2.v4.1 annot-version=v4.1 ATGGGAGGTGCCTGTTGTGTTGCTGCTAGAGATAAAAATATAGTAAGTGGACCAGGTGGTGACATCTTGCATAGAAATATTCGTTATTCACCATCTTGGA GCTTTAGATGGGATAATCGAGGGCGAGTAGCAGGGGAAGATGCTTCGATAAGTTGGTTTTCTGGTGGAATTAGCAGGAATTATGGATCAGATATTAAACA TGAATCAACCTATGCATCTGAGGATGGAAGCCCAACGGAGAGTTTCCAGAGACGTACATGGCAGAAATCCCCAACATCTGAAGGAACTGCTGCTCGTGTG AGGACTCCTACTTCAGATCAATCCATCTCGAGGAATATCTCAATGGACACGAGTTTGGAACAGGTGGAGGAGTCAACAGAATCCACTGCAGTTCTGAAAC TATCTCCTGCAAAATCCTCGCTTTCATTGCCCTCATCCTCATCCTCATCAACATCTCCACTTCCATCCCAAGGTCACTTACATCCTGCCAGCTCAACACC AAGGTGGCTCCAGCATTCTTCTAGAAATCAACTAACAAAGCCAGTATCTGATGCGCTAATCCCTGGATTGAAGTCATCAAAGAGCATCCCAGTTTCTGAT GAGAGGCCTCCTATTCCTTCATGGAGCAATGGATCAACTCGGGGATGCCATGGTGAGTCTTCAGATGGTTGGTCTATGCATGCATTTTCTGAGCTCACGG CCACTTCCAATAGAGAAAGGTGGTCTTTTGATAACGAGTGCTTGGGCTTTAATCATAAGAAGACAAGATCCAGCGGTCGAAACTCATCTTTTCCTTCGGT TGATCTTCAAACATGTGGGATCTGCTTGAAGCTATTGACTGAAAAATCTTTGTGGAGCAGCCAGAAGCTTATTGCTAGTAATGAGCTCTCCGTTGTTGCT GTCTTAACTTGTGGTCATGCTTATCATGCTGAGTGTTTGGAAGCTTTGACACCTGAAATTAATAAGTATGATCCTGCATGCCCATTTTGTACCTTGGGAG AGAAGCAGGCCTTTCAGCTGTCTCAAAAAGCTTTAAAAACAGAAACCGATTTGAAGGCTAGAAACAAGAAACTGAGGAGCAGAGTAGTTGATGGTGATCT TGATGGTGATTCTATCATGTTTGATCGCTTAAAAGGTGGTGGACAGGAAGGAAAGGGTCCCGAGATGGGCTCAAGTGCCAGCATGAAAAGCTCCTTGGCG AAGCCTTTCTTGAGGAAACATTTTTCATTTGGATCCAAAGGGAGTAGATCCTCCACGGAGACTCACTCAACTAGAAAGAAAGGGTTCTTCTGGACAAAAT CTTTGAGGGGATGA
AA sequence Show only first row Show all	>Potri.009G120000.2 pacid=42771639 polypeptide=Potri.009G120000.2.p locus=Potri.009G120000 ID=Potri.009G120000.2.v4.1 annot-version=v4.1 MGGACCVAARDKNIVSGPGGDILHRNIRYSPSWSFRWDNRGRVAGEDASISWFSGGISRNYGSDIKHESTYASEDGSPTESFQRRTWQKSPTSEGTAARV RTPTSDQSISRNISMDTSLEQVEESTESTAVLKLSPAKSSLSLPSSSSSSTSPLPSQGHLHPASSTPRWLQHSSRNQLTKPVSDALIPGLKSSKSIPVSD ERPPIPSWSNGSTRGCHGESSDGWSMHAFSELTATSNRERWSFDNECLGFNHKKTRSSGRNSSFPSVDLQTCGICLKLLTEKSLWSSQKLIASNELSVVA VLTCGHAYHAECLEALTPEINKYDPACPFCTLGEKQAFQLSQKALKTETDLKARNKKLRSRVVDGDLDGDSIMFDRLKGGGQEGKGPEMGSSASMKSSLA KPFLRKHFSFGSKGSRSSTETHSTRKKGFFWTKSLRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	0	1
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	2.23	0.8219
AT2G33360			Protein of unknown function (D...		Potri.008G171400 [exp]	2.23	0.7440
AT5G25820			Exostosin family protein (.1)		Potri.018G043700 [exp]	3.31	0.7199
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	4.89	0.7533
AT5G42785			unknown protein		Potri.005G228800 [exp]	5.09	0.7699
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	5.29	0.7339
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025350 [exp]	6.92	0.7341
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	10.39	0.6994
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	11.83	0.7486
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	12.36	0.7241

Compare expression of checked genes

Potri.009G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.