Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21470 900 / 0 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 152 / 5e-40 ECR1 E1 C-terminal related 1 (.1) AT5G06460 125 / 1e-29 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 119 / 1e-27 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 91 / 6e-19 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 73 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G32410 62 / 5e-10 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 57 / 3e-08 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158900 [exp] 1129 / 0 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.010G031900 [exp] 155 / 5e-41 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 155 / 5e-41 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.009G075700 [exp] 133 / 4e-32 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 130 / 3e-31 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 130 / 4e-31 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 95 / 2e-20 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 68 / 7e-12 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G229100 [exp] 62 / 6e-10 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017479 [exp] 965 / 0 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 931 / 0 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 153 / 3e-40 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 153 / 3e-40 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10012507 [exp] 129 / 8e-31 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 124 / 4e-29 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 123 / 8e-29 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10000697 [exp] 96 / 1e-20 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 95 / 2e-20 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10031562 [exp] 63 / 5e-10 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF10585 [poplar] [flax] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [poplar] [flax] PF14732 [poplar] [flax] UAE_UbL Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
Representative CDS sequence Show only first row Show all	>Potri.009G120200.2 pacid=42772303 polypeptide=Potri.009G120200.2.p locus=Potri.009G120200 ID=Potri.009G120200.2.v4.1 annot-version=v4.1 ATGGCTTCTCTTCAACACTCACAAGCGATAAAGGGTGCGAAAGTGCTTATGGTTGGAGCAGGTGGGATTGGTTGTGAGTTACTTAAGACTCTTGCTCTTT CTGGCTTTCAAGATATTCATATTATTGACATGGACACTATAGAAGTAAGCAACCTTAATAGACAATTTCTGTTCCGTCAATCACATGTTGGACAGTCTAA AGCAAAGGTCGCTCGTGATGCCGTGCTAAGATTTAGGCCTCACATAAGCATTACCCCTTACCATGCCAATGTGAAGGATTCTAACTTCAATGTCGACTTC TTCAAGCAATTTAATGTTGTTCTGAATGGACTTGATAACTTGGATGCAAGGCGACATGTGAACCGCCTTTGCTTGGCTGCTGAAGTTCCTTTGGTTGAAA GTGGAACTACTGGGTTCCTAGGACAGGTTACAGTGCATGTGAAGGGAAAAACAGAGTGCTATGAGTGTCAGCCTAAACCTGCCCCAAAGACATATCCTGT CTGCACAATTACTAGTACTCCATCAAAGTTTGTTCACTGTATTGTTTGGGCAAAGGAACTGCTTTTTGCAAAATTATTTGGAGACAAGAACCAGGTAAAT GATTTAAATGTGCGCTCTAATGATGCTTGTAGCTCATCTGAAAACACAAACGATGTATTTGAATGGAGAGATGATGAAGACTTCGAGCAATATGGAAGAA GAATATATGATCATGTTTTCGGCTATAACATTGAACTAGCTTTGTCTGATGAAGAGACATGGAAAAAACGCAATAAGCCAAGGCCCATATATAGTAGGGA TGTCCTGCCTGACAAAATGACCCAACAGAATGGAAATGTTGATAAAACTGATGATCTTTCTTCAGCATCTGCCATGGCATCTTTAGGCCTAAAGAATCCA CAGGATATATGGTGCCTAGTGGAAAATACAAGAGTTTTTCTTGAGGCTTTGAAGCTATTTTTTACGAACAGAAAAAAGGAGATTGGGAACCTGAGTTTTG ACAAAGATGATCAGTTAGCTGTGGAATTTGTTACTGCAGCTGCAAATATTCGGGCTGCTTCATTTAACATTCCTTCACACAGCCTTTTTGAAGCTAAAGG TATTGCTGGGAATATTGTACATGCTGTTGCAACAACAAATGCTATTGTAGCTGGTTTAATTGTCATTGAAGCAATCAAGGTGTTGAAAAAGGATACTGAC TGTTACAGGATGACATATTGTCTCGAACATCCATCTAAAAAAATGCTTCTTATGCCAGTGGAACCCTTTGAGCCAAACAAGTCCTGCTTTGTTTGTTCTT CTCAGACACCTCTGTCACTGGAGATTAATACTCATCGTTCAAAGTTGCGGGATTTTGTTGAAAAGATAGTAAAAGCCAAGCTTGGTATGAACTCCCCCCT GATTATGTGTGGCTTAGCCCTTCTTTATGAGGTTGGCGATGATCTTGAAGAAGACATGATAGCAAATTATACAGCAAACCTTGAAAAGGTACTATCTGAG CTTCCTTCTCCAGTCACTGGTGGGAAAATGCTCACAGTAGAGGATCTTCAACAGGAGTTCACATGCAATATCTATATTAAGCATAGAGAAGAATTTGATG AGGAGAAAGAACCTGATGGAATGGTTCTTTCAGGATGGACACAAGCTCCTCCTGAGAAGAAGGATGATAAAACATCTATTGGAAATGGTGCAAGTACATC AAAGTCATTGCCAACAGAGCCTATGGATGCCCAGAAAGATATCAAGGTGAAAGAAATTTCAGATGGCACTGCTAGTCCAGGAAAGAAGAGAAAACTGCCT GAGTTTTCTGAGGGCTGCACTCTGGATCAGTCAAATGAGGCTGATGAAACTAGGAATGACAAGAAAATCCAAAAGCTTGATGATGACGATGATGATGACC TTGTCATGCTTGATCATTGGGGTAAGGACACAAGCAAGAAGCAAAGATTGCAGTAG
AA sequence Show only first row Show all	>Potri.009G120200.2 pacid=42772303 polypeptide=Potri.009G120200.2.p locus=Potri.009G120200 ID=Potri.009G120200.2.v4.1 annot-version=v4.1 MASLQHSQAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPHISITPYHANVKDSNFNVDF FKQFNVVLNGLDNLDARRHVNRLCLAAEVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLFGDKNQVN DLNVRSNDACSSSENTNDVFEWRDDEDFEQYGRRIYDHVFGYNIELALSDEETWKKRNKPRPIYSRDVLPDKMTQQNGNVDKTDDLSSASAMASLGLKNP QDIWCLVENTRVFLEALKLFFTNRKKEIGNLSFDKDDQLAVEFVTAAANIRAASFNIPSHSLFEAKGIAGNIVHAVATTNAIVAGLIVIEAIKVLKKDTD CYRMTYCLEHPSKKMLLMPVEPFEPNKSCFVCSSQTPLSLEINTHRSKLRDFVEKIVKAKLGMNSPLIMCGLALLYEVGDDLEEDMIANYTANLEKVLSE LPSPVTGGKMLTVEDLQQEFTCNIYIKHREEFDEEKEPDGMVLSGWTQAPPEKKDDKTSIGNGASTSKSLPTEPMDAQKDIKVKEISDGTASPGKKRKLP EFSEGCTLDQSNEADETRNDKKIQKLDDDDDDDLVMLDHWGKDTSKKQRLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.009G120200 [exp]	0	1
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	3.74	0.8330
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	4.89	0.8061
AT5G09390			CD2-binding protein-related (....		Potri.003G023700 [exp]	5.65	0.8105
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	10.67	0.7966
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	12.16	0.8036
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	13.41	0.7755
AT5G52140			RING/U-box superfamily protein...		Potri.015G138700 [exp]	14.07	0.7825
AT5G05800			unknown protein		Potri.015G137800 [exp]	15.00	0.7918
AT3G53670			unknown protein		Potri.006G082100 [exp]	16.49	0.7506
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	19.77	0.7632

Compare expression of checked genes

Potri.009G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.