Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39120 466 / 1e-165 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT3G02870 99 / 1e-23 VTC4 Inositol monophosphatase family protein (.1.2.3) AT1G31190 84 / 7e-18 IMPL1 myo-inositol monophosphatase like 1 (.1) AT5G54390 47 / 1e-05 ATAHL, AHL HAL2-like (.1) AT5G09290 45 / 3e-05 Inositol monophosphatase family protein (.1) AT5G64000 45 / 4e-05 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63980 44 / 0.0001 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G63990 43 / 0.0001 Inositol monophosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011000 [exp] 97 / 4e-23 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 96 / 8e-23 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 94 / 5e-22 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.010G156300 [exp] 94 / 6e-22 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.012G120492 [exp] 86 / 2e-18 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 82 / 3e-17 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.004G033200 [exp] 56 / 2e-08 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.011G124700 [exp] 46 / 3e-05 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.005G063900 [exp] 45 / 3e-05 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041968 [exp] 484 / 8e-173 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 463 / 7e-165 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10027343 [exp] 95 / 4e-22 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10018305 [exp] 84 / 6e-18 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10039046 [exp] 80 / 1e-16 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10040601 [exp] 73 / 4e-14 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10037677 [exp] 46 / 3e-05 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10015663 [exp] 45 / 4e-05 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037888 [exp] 41 / 0.001 AT5G54390 497 / 6e-177 HAL2-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00459 [poplar] [flax] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Potri.009G120600.1 pacid=42772612 polypeptide=Potri.009G120600.1.p locus=Potri.009G120600 ID=Potri.009G120600.1.v4.1 annot-version=v4.1 ATGCTTTCTCATCGATTACAATTCCATCTCCTCTCTCAAAATCCCAAAAAAGCCTTTACCTTTTCCCCTCCTTCTCGCTCCAATCCTCACTCTTTCCTTC ACTTCTCGCCAAACACAACCAATCTCTCCTTTCCTGGACTAAAAATCAAAACCCACTTGAATTCCGCCATGACTTCGAATTCTAATCAATCCAACCCTCT CCAATTAGACCTCACTGAAGCAGACATTGATGGCTTCTCTGATGTAGCCAACAAGCTTGCTGATGCCTCTGGTGAAGTGATTAGAAAGTATTTTAGAAAG AAATTTGAAATTCTTGACAAAGAGGATTTGAGTCCTGTTACTATAGCTGATAAAGCAGCGGAGGAAGCTATGATTTCAATTATACTAGAGAATTTTCCTT CTCATGCAATTTTCGGGGAGGAGAATGGGTGGAGGTGTAAAGAGGAGTTTTCAGATTTCGTTTGGGTTTTGGATCCGATAGATGGGACCAAGAGTTTTAT TACTGGTAAACCTTTGTTTGGTACACTCATTGCTTTGCTATATAAGGGTAAACCGATTCTTGGCATAATTGATCAGCCTGTACTAAGGGAACGATGGATT GGCTTAAATGGAAGGAGAACGACATTGAATGGAGAGGAAATATCTACACGGGCTTGTGCCAAACTGTCACAAGCATATTTGTATACCACTAGCCCACATC TGTTCAGTGGGGATGCTGTAGAAGCTTTTGCTCGTGTTAGAAGCAAGGTGAAAGTGCCATTATATGGCTGTGACTGTTATGCTTATGCTCTTTTGGCTTC TGGATATGTAGACCTCGTTATCGAGTCTGGTCTCAAGCCCTACGATTTCCTTGCCCTGATACCTGTGATAGAGGGAGCTGGAGGCATTATAACAGACTGG AAAGGACACCACCTCTTCTGGGAGGCTTCTCCAGATTCTCGTGCAACAAGTTTCAATGTAGTGGCGGCTGGAGATAAACAAATTCACCAACAAGCTCTAG ATGCATTACAATGGCATTGA
AA sequence Show only first row Show all	>Potri.009G120600.1 pacid=42772612 polypeptide=Potri.009G120600.1.p locus=Potri.009G120600 ID=Potri.009G120600.1.v4.1 annot-version=v4.1 MLSHRLQFHLLSQNPKKAFTFSPPSRSNPHSFLHFSPNTTNLSFPGLKIKTHLNSAMTSNSNQSNPLQLDLTEADIDGFSDVANKLADASGEVIRKYFRK KFEILDKEDLSPVTIADKAAEEAMISIILENFPSHAIFGEENGWRCKEEFSDFVWVLDPIDGTKSFITGKPLFGTLIALLYKGKPILGIIDQPVLRERWI GLNGRRTTLNGEEISTRACAKLSQAYLYTTSPHLFSGDAVEAFARVRSKVKVPLYGCDCYAYALLASGYVDLVIESGLKPYDFLALIPVIEGAGGIITDW KGHHLFWEASPDSRATSFNVVAAGDKQIHQQALDALQWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Potri.009G120600 [exp]	0	1
					Potri.017G044550 [exp]	2.00	0.9133
AT4G31560		HCF153	high chlorophyll fluorescence ...		Potri.003G203300 [exp]	9.79	0.8942
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	20.29	0.8059
AT1G53035			unknown protein		Potri.011G119200 [exp]	20.78	0.8759
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Potri.017G135500 [exp]	25.13	0.9089
AT1G09600			Protein kinase superfamily pro...		Potri.003G003700 [exp]	27.76	0.7823
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	28.72	0.7757
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131300 [exp]	30.74	0.9081
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.004G040700 [exp]	37.69	0.9020
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	48.06	0.8953	GY4.2

Compare expression of checked genes

Potri.009G120600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.