Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34610 417 / 4e-139 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 405 / 8e-135 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G75410 305 / 1e-95 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 303 / 6e-95 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G35940 273 / 7e-82 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G36870 251 / 4e-73 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 248 / 5e-73 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G27220 228 / 1e-67 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT5G41410 233 / 2e-67 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT1G75430 212 / 2e-63 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159300 [exp] 1167 / 0 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 444 / 9e-148 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.006G203000 [exp] 323 / 1e-100 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 318 / 7e-99 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 310 / 3e-95 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 301 / 5e-92 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.003G131300 [exp] 261 / 9e-78 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.005G129500 [exp] 265 / 1e-77 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G232000 [exp] 253 / 9e-77 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000184 [exp] 788 / 0 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 783 / 0 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 745 / 0 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 314 / 2e-97 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 305 / 7e-94 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10010633 [exp] 292 / 6e-90 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10033192 [exp] 277 / 3e-84 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10013579 [exp] 274 / 9e-84 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 236 / 2e-70 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 235 / 2e-67 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.009G120800.1 pacid=42771360 polypeptide=Potri.009G120800.1.p locus=Potri.009G120800 ID=Potri.009G120800.1.v4.1 annot-version=v4.1 ATGGCTACCTATTACACTAGTTCGAATAATCAAAGAGACGCAGCTGCAATGGTATATCTGCCTGGTTCATATCCAGAAGCACCGGTTCTTCATGGCAATA TGATGATGTACATGAATTCTGGATCATACTCGGATAATTTGGCTGGGAATTCTCACCATCAAAACAACTGTATTGAATTTCAGTCCGTGGAGAATTCTGC AAACCCACAACAACAAGAAATCCTGTCAAATCTGGGTGGATCACGAATAGGGGAGCATGATTTTGGTGCATGGAGGGATGGTAGAAATGAGATGCTAGTC ATGCAGTCAGTGAGCGGTGCTTCCAGCATTCTTCACGGTGCGCAGAGTTTGCAGGGCCAGGGTTTATCTCTTAGTCTTGGCACTCAAATCCCTTCTGGAA CGCAAATGCCTTCTATTCCTTACCGGAATACCAATCCAGGACTCACTTCATTCTTGAGTCCGAATTTTTCCATTTCGGGGGAGGGTGGTGGCAGGAATGG CTCTTCCAGAGATGAGCAGTCGAGAAATATTGAATATTTGACGCCTGTTTTTTCTGGAGGCAATCACGATGTGAATAAAGGTGATTTGTCCCCCTATGGA ATGAATAGCGTTGGAAGAACGATTCCCAATTCCAAGTACCTGAAGGCAGCACAACAACTACTTGATGAAGTTGTCAATGTTCAAAAAGCTCTAAAGCAGC CTGATAAAGAGAAAAACCAGACCACAAGTGAACATGGACTGAACCGTGCAAAAGAGGGTGATAGTGGATCAAAGAATGGGGCTTCAAACCCTCAAGAATC CACCAACTCTCCAAGTGAGCTTTCGCATGCTGAAAGACAAGAATTGCAGAACAAGTTGACAAAACTTTTATCCATGCTAGACGAGGTTGATAGACGATAC AAACAATATTACCATCAGATGCAAATTGTGGTGTCTTCATTTGATGTGATAGCAGGATGTGGAGCAGCTAAACCATACATAGCACTCGCGCTCCAGACTA TTTCACAACACTTTCGGTGCTTGCGTGATGCAATAACTGGCCAAATTCGTGCAACCCGTAATAACCTCGGGGAACAAGAAACCTCAGAAAATAGTAAAGG AGTTGGAATATCACGACTTCGGTATGTGGACCAGCAGCTTAGGCAACATAGGGCTCTCCAGCAACTTGGTATGATGAAACAGCATGCGTGGAGGCCACAA AGGGGTCTGCCTGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGAGCATTTTCTCCATCCTTATCCAAAGGATTCTGATAAGATCATGCTGGCAA GGCAGACAGGCTTGACTAGAAGTCAGGTATCAAACTGGTTCATTAATGCACGAGTGCGTCTCTGGAAGCCCATGGTTGAAGAGATGTACAAGGAAGAGCT TGGTGATGCAGAGATGGACTCTAATTCGTCTTCTGAAAATGCAGCCAAAGCAACAAAAGGTGACATGGGGACCTCTGAAGAAAAGGGGGAAGAATTCCAA CAAAGTGCTAGTTCCACAGCCACTGGAAGATGCAGTGGAGGACAATTGATGGATTCCAAGTCTGACCATGTTTCTGAGGTAGAAATGGCAGGAACAACTG CGAGAAGCAACTTCCATAATGGCACACGTGGTGAGACTTTTACCGAGTATGGATTACTAAAGTTGAGGGAGGACCAAAGGCCTAGTATGGAGGACTGTAG TCTCTTCTCTGATGCCATGGCTCACTCTGAGGGGGGTGGTGATAGGTTTATGGCAGCAGCTGCTGCTGCTTACCAAATGTCAGAGGTGAGGAGGTTTGGA AATGGAAGTGGGGTATCTCTTACATTAGGATTGCAGCACTGCGAGGGTGGTAGCCTTCCAATGTCGGGTACAACACATCATGGTTTTGTTTCCGTGAGAG GGGATGATGATATCTACAATGCAGCATCTTCGGTGGGGGCTGGCCCCACAGATTTTGAATGCTTAAATCCAGGGAACCGGCAACACAGATTCAGTTCCTC CCATGTATTTCATGATTTCGTTGCTTGA
AA sequence Show only first row Show all	>Potri.009G120800.1 pacid=42771360 polypeptide=Potri.009G120800.1.p locus=Potri.009G120800 ID=Potri.009G120800.1.v4.1 annot-version=v4.1 MATYYTSSNNQRDAAAMVYLPGSYPEAPVLHGNMMMYMNSGSYSDNLAGNSHHQNNCIEFQSVENSANPQQQEILSNLGGSRIGEHDFGAWRDGRNEMLV MQSVSGASSILHGAQSLQGQGLSLSLGTQIPSGTQMPSIPYRNTNPGLTSFLSPNFSISGEGGGRNGSSRDEQSRNIEYLTPVFSGGNHDVNKGDLSPYG MNSVGRTIPNSKYLKAAQQLLDEVVNVQKALKQPDKEKNQTTSEHGLNRAKEGDSGSKNGASNPQESTNSPSELSHAERQELQNKLTKLLSMLDEVDRRY KQYYHQMQIVVSSFDVIAGCGAAKPYIALALQTISQHFRCLRDAITGQIRATRNNLGEQETSENSKGVGISRLRYVDQQLRQHRALQQLGMMKQHAWRPQ RGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEELGDAEMDSNSSSENAAKATKGDMGTSEEKGEEFQ QSASSTATGRCSGGQLMDSKSDHVSEVEMAGTTARSNFHNGTRGETFTEYGLLKLREDQRPSMEDCSLFSDAMAHSEGGGDRFMAAAAAAYQMSEVRRFG NGSGVSLTLGLQHCEGGSLPMSGTTHHGFVSVRGDDDIYNAASSVGAGPTDFECLNPGNRQHRFSSSHVFHDFVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	0	1
AT1G12760			Zinc finger, C3HC4 type (RING ...		Potri.003G123300 [exp]	1.00	0.8521
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.007G035200 [exp]	3.46	0.8016	Pt-XLG.2
AT1G12020			unknown protein		Potri.004G001800 [exp]	6.16	0.7211
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	10.09	0.7488
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.008G039000 [exp]	10.39	0.7397
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.005G126400 [exp]	10.48	0.7278
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.009G135201 [exp]	11.09	0.6888
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	12.36	0.7241
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	17.32	0.7207
AT5G39785			Protein of unknown function (D...		Potri.017G082300 [exp]	17.54	0.7478

Compare expression of checked genes

Potri.009G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.