Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SHL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39100 317 / 6e-111 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G22140 311 / 8e-109 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 210 / 3e-69 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 54 / 2e-08 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 54 / 3e-08 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 50 / 4e-07 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT4G11560 50 / 4e-07 bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 50 / 4e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 47 / 4e-06 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT1G14510 43 / 6e-05 Alfin AL7 alfin-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159900 [exp] 422 / 1e-152 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 310 / 2e-108 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 310 / 2e-108 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 307 / 5e-107 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 306 / 9e-107 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 299 / 1e-103 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G127400 [exp] 54 / 3e-08 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G104300 [exp] 52 / 7e-08 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 45 / 2e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017482 [exp] 379 / 3e-135 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 367 / 1e-130 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 328 / 1e-115 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 295 / 4e-102 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 295 / 5e-102 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 255 / 2e-83 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10008527 [exp] 50 / 7e-07 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 49 / 8e-07 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10033410 [exp] 47 / 4e-06 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10028280 [exp] 42 / 0.0001 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.009G121000.2 pacid=42772725 polypeptide=Potri.009G121000.2.p locus=Potri.009G121000 ID=Potri.009G121000.2.v4.1 annot-version=v4.1 ATGGCCAAAGCTAAAGCACCAAGACGCACTCTTGACTCTTACACTGTTAAACCCATCAACAAAATCGTTAAACCCGGAGATTGCGTGTTGTTGCGACCAT CGGATCCGTCGACGCCCTCGTACGTGGCGAAGATTGAGCGGATTGAATCCGACGGTAGAGGAGCCAACGCGAGGGTACATGTACGGTGGTATTACCGCCC GGAGGAATCAATTGGTGGCCGCCGGCAGTTTCACGGCTCAAAGGAGGTTTTTTTCTCCGATCATTATGATATCCAGAGTGCAGACACGATTGAAGGGAAG TGTACGGTTCATAGTTTCAAGAGTTATACCAAGCTTGATGCTGTTGGAAATGATGATTTCTTTTGTCGTTTCGAGTATAATTCGTCTACTGGTGCTTTTA TTCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCGTACAATCCTGATGACTTGATGGTTCAATGTGAAATCTGTAGTGATTGGTTTCATCCTGC TTGTATAGAAATGTCTGCAGAGGAAGCTAAAAGACTTGATCACTTCTTCTGTGAGAACTGTTCATCTGAAAGCCAGAAGAAGTTGCAGAATCCGCATAAT ACCAGACAATCAGATGCAAAGGTGGAAACAAAGAGACGCCGAAGGTGA
AA sequence Show only first row Show all	>Potri.009G121000.2 pacid=42772725 polypeptide=Potri.009G121000.2.p locus=Potri.009G121000 ID=Potri.009G121000.2.v4.1 annot-version=v4.1 MAKAKAPRRTLDSYTVKPINKIVKPGDCVLLRPSDPSTPSYVAKIERIESDGRGANARVHVRWYYRPEESIGGRRQFHGSKEVFFSDHYDIQSADTIEGK CTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFIPDRVAVYCKCEMPYNPDDLMVQCEICSDWFHPACIEMSAEEAKRLDHFFCENCSSESQKKLQNPHN TRQSDAKVETKRRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	0	1	SHL1.1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G225000 [exp]	1.00	0.8836
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.014G089300 [exp]	3.00	0.8569
AT1G13360			unknown protein		Potri.015G054300 [exp]	3.46	0.8550
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.003G130301 [exp]	4.58	0.8537
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Potri.001G371900 [exp]	4.89	0.8356
AT1G05060			unknown protein		Potri.014G156700 [exp]	5.09	0.8329
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.013G152100 [exp]	6.32	0.8418
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	7.61	0.8065
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G016400 [exp]	7.87	0.8033
AT3G52220			unknown protein		Potri.008G019100 [exp]	9.38	0.8499

Compare expression of checked genes

Potri.009G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.