Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16405 518 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 85 / 7e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 63 / 1e-10 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 59 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 52 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 51 / 2e-06 TAF5 TBP-associated factor 5 (.1) AT5G50230 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160000 [exp] 643 / 0 AT2G16405 730 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 86 / 2e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 81 / 2e-16 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 79 / 6e-16 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 59 / 7e-09 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 58 / 9e-09 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G087200 [exp] 57 / 3e-08 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G110500 [exp] 56 / 5e-08 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 54 / 1e-07 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028800 [exp] 469 / 3e-162 AT2G16405 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017483 [exp] 456 / 9e-155 AT2G16405 637 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 83 / 3e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 83 / 4e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 75 / 2e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 74 / 5e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 56 / 1e-07 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004893 [exp] 52 / 7e-07 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10020846 [exp] 52 / 9e-07 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020585 [exp] 52 / 1e-06 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.009G121100.2 pacid=42772120 polypeptide=Potri.009G121102.1.p locus=Potri.009G121100 ID=Potri.009G121100.2.v4.1 annot-version=v4.1 ATGGCGGAGCCAGTAGATAACAACAACAGCAACAGCAACAAAGAAATAAACAACGGCTCAAGAGAATCTAACAACGAGAATAATTACAATAATGACGAAG AGAATAAGAAGACGAAAAAAAATGTAGATCCGGAATCATCCAGCTCCCACTCCGGTGTTCATCGCCGTCTTATGCAATGGAAAAGGGTATGTGACTTTCG TAATTACATTCGCAGGCCAAGAAATTGGGACAATTTGCCAAGCCACCAAAGCACTCCGGGAAACAGTGGACGATGGCTTCAATCTACGAGTCCACTCTCC CATTTGTTCGAGGTGGACAGCTGGACTTCCAGCCAGAACCTGCGAAGTATCAATCCATCTTCTACTCGCAGAACAAGTTTTAGTTCAACTGCAAGTGATA ATGATTCTCTACGTCGCCGAGGGCCTGAGCCTGCGTCTTCTTTTGTAGGAATGCATTGCATCTTTGATCAATGCAAAGCTGCTGCACCCTCATTTTTCTT ATATGCGGTTACTGTTTTGAAGTTTGGGTACATGAGTTCTGATGTCTCAGAACCACCTTCAGTCATAAAGAAATTAGAGGGCCATTCTAAAGATGTCACA GACTTCGACTTCTCATCCAACAATCAGTACATTGCATCAGCATTCATGGATAAAACTGTGAGAGTATGGGAGTTGTCAAAAGGGATTTGCATTCGAGTAA TATATGGAGTCTCTTCACAGTTGTGTATTCGTTTTCATCCTGTAATTGGCAATGCAAACAGAGAAATTACTGTATTTAATTTCAGCACTGGCAGGATTAT TAATAAATTGGTGCTTGATGATAAGGTTACTGCTTTGGACCATGATCACACTGGTCACCTCTTTTCAGTGGGGATGCACAGGCGACTCTTCTTCTGTGCG TTGTTTCGGTCTCATCGCTATCGAAGTAGTGGCAAGAGCAGATATCAAGTTACAACTGTATGGTACCGGAGTCTCTCTCTGCTAGCTGGAGGCCCAGTGT TGCTGACCTGTACTCAAGATGGAAGTTTTTCTTTCTTTAGTGTTGCCTTGGAAATAAAAGGTTATCTGACTCTTAGTGGCTCACTCAAATTGGCTCCTCG AGTACATAGCATCAGGGCTTCTTTCTGTCCCCTGCTTTCCCTTGAAAAAGGAGAGTATATAGTTGCCGGAAGTGAGGATTCAAATGTATATTTCTACGAC CTAACTCGGCCAAAGCATACGTGCGTCAACAAGCTACAGGGTCATCGCTTTCCAGTTGGTGATGTTGCGTGGAACCACGGGGAGAATTTGCTGGCTACAT CTGATATTTATGGCATCGTTATTTTATGGAAGAGAGAAAAGACAAGACAGGAAACAGTAGGACAAAATGCTATTTTTCTCGGTAACTTGTGTTATTTCTC ATCTTGGCTTCCGCTTTCAGAGTCGCAATCAGAACTTTTTCCCAGCGGTACTGGTGGACAGTTTTTCTTATCAAGCTAA
AA sequence Show only first row Show all	>Potri.009G121100.2 pacid=42772120 polypeptide=Potri.009G121102.1.p locus=Potri.009G121100 ID=Potri.009G121100.2.v4.1 annot-version=v4.1 MAEPVDNNNSNSNKEINNGSRESNNENNYNNDEENKKTKKNVDPESSSSHSGVHRRLMQWKRVCDFRNYIRRPRNWDNLPSHQSTPGNSGRWLQSTSPLS HLFEVDSWTSSQNLRSINPSSTRRTSFSSTASDNDSLRRRGPEPASSFVGMHCIFDQCKAAAPSFFLYAVTVLKFGYMSSDVSEPPSVIKKLEGHSKDVT DFDFSSNNQYIASAFMDKTVRVWELSKGICIRVIYGVSSQLCIRFHPVIGNANREITVFNFSTGRIINKLVLDDKVTALDHDHTGHLFSVGMHRRLFFCA LFRSHRYRSSGKSRYQVTTVWYRSLSLLAGGPVLLTCTQDGSFSFFSVALEIKGYLTLSGSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYD LTRPKHTCVNKLQGHRFPVGDVAWNHGENLLATSDIYGIVILWKREKTRQETVGQNAIFLGNLCYFSSWLPLSESQSELFPSGTGGQFFLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16405			Transducin/WD40 repeat-like su...		Potri.009G121100 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Potri.001G293150 [exp]	4.35	0.7131
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.008G068500 [exp]	7.07	0.7856
AT4G24730			Calcineurin-like metallo-phosp...		Potri.015G085232 [exp]	7.74	0.7613
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	12.72	0.7382
AT5G27950			P-loop containing nucleoside t...		Potri.013G033900 [exp]	13.41	0.7312
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	14.83	0.7111
AT1G06330			Heavy metal transport/detoxifi...		Potri.018G150200 [exp]	22.22	0.6920
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Potri.004G022500 [exp]	24.37	0.6826
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.015G059000 [exp]	30.39	0.6432
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	34.24	0.7050

Compare expression of checked genes

Potri.009G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.