Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 773 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 687 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 591 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 582 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 550 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 530 / 0 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 528 / 0 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 406 / 2e-139 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 282 / 3e-90 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 275 / 2e-87 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160100 [exp] 872 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 754 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 726 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 554 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 551 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 538 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 294 / 7e-95 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 285 / 2e-91 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 269 / 5e-85 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028799 [exp] 770 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 769 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 754 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 691 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 689 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 682 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10024299 [exp] 611 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10039978 [exp] 550 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 548 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 542 / 0 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G121200.1 pacid=42772108 polypeptide=Potri.009G121200.1.p locus=Potri.009G121200 ID=Potri.009G121200.1.v4.1 annot-version=v4.1 ATGCATATGTCAAAGGGTTTGGAGTGTGGAAAGCACAAGATGTTGAACTCTAATTTGAAGAGGATGGGCTCTTCTCCTTCTTCTTCATCCGTTGTTTTTG CAGTTTTGTTCTTGGTTCTTAACGCGCCTGTGTTGTGTCATGGAGGCAAAACCAGTAGTTTTGTTAGGAAAGTGGAGAAAACTGTTGATATGCCTCTTGA TAGCGATGTTTTCAGAGTCCCTCCCGGCTACAATGCTCCCCAACAGGTTCATATAACTCAAGGAGATCATGTGGGCAAGGCAGTTATAGTGTCGTGGGTC ACTGCTAATGAACCAGGTTCAAAAAAAGTAATTTACTGGAGTGAAAATAGCGAACATAAGGAGGAGGCTAACAGCAAGGTTTATACCTATAAATTCTACA ATTACACGTCTGGCTACATTCACCACTGTACCATCAGAAACTTAGAGTTCAACACAAAATATTACTATGTAGTAGGGGTTGGGCACACCGAAAGAAAATT CTGGTTTACCACTCCTCCTGCAGTTGGTCCTGATGTCCCATATACATTTGGTCTCATAGGGGATCTTGGTCAGAGTTATGATTCAAACACAACACTTACT CACTATGAAAAGAACCCAACAAAAGGGCAAGCAGTTTTGTTTGTTGGAGACCTATCTTATGCCGATAACTATTCAAATCATGACAATGTGAGATGGGATA CATGGGGAAGGTTTGTAGAGAGAAGTGTTGCTTATCAACCTTGGATATGGACTGCAGGAAATCATGAGATTGACTTTGCCCCAGAAATTGGTGAAACTAA ACCATTTAAGCCTTTTACTCACCGCTACCATGTCCCTTATAGAGCATCAAAAAGTACCGCTCCTTTATGGTACTCAATCAAGAGGGCTTCAGCATACATC ATTGTCTTGTCTTCATACTCAGCATATGGTAAATACACTCCTCAATACAAATGGCTTGAACAGGAGCTACCAAAAGTTAATAGGAGTGAGACACCGTGGT TGATTGTTCTTATGCATTCTCCATGGTATAATAGTTACAACTATCATTACATGGAAGGAGAGACCATGAGAGTAATGTACGAGCCATGGTTTGTTCAGTA CAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTGAACGCATATCGAACATTGCATACAACATAGTAAACGGAAAGTGCGTTCCG GTAAGAGATCAAACTGCCCCAGTTTACATTACCATTGGCGATGGAGGAAATATTGAAGGCTTAGCAACAAACATGACATATCCACAACCAGAGTACTCAG CATACCGCGAGGCCAGTTTTGGTCATGCCATTTTCGATATCAAGAACAGAACCCATGCTTACTATGGCTGGCACCGCAATCAAGATGGATATGCTGTGGA AGCTGACACCATGTGGTTCTTCAACAGATACTGGCATCCGGTTGATGATTCAACAAATTCTGAATCGTGA
AA sequence Show only first row Show all	>Potri.009G121200.1 pacid=42772108 polypeptide=Potri.009G121200.1.p locus=Potri.009G121200 ID=Potri.009G121200.1.v4.1 annot-version=v4.1 MHMSKGLECGKHKMLNSNLKRMGSSPSSSSVVFAVLFLVLNAPVLCHGGKTSSFVRKVEKTVDMPLDSDVFRVPPGYNAPQQVHITQGDHVGKAVIVSWV TANEPGSKKVIYWSENSEHKEEANSKVYTYKFYNYTSGYIHHCTIRNLEFNTKYYYVVGVGHTERKFWFTTPPAVGPDVPYTFGLIGDLGQSYDSNTTLT HYEKNPTKGQAVLFVGDLSYADNYSNHDNVRWDTWGRFVERSVAYQPWIWTAGNHEIDFAPEIGETKPFKPFTHRYHVPYRASKSTAPLWYSIKRASAYI IVLSSYSAYGKYTPQYKWLEQELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERISNIAYNIVNGKCVP VRDQTAPVYITIGDGGNIEGLATNMTYPQPEYSAYREASFGHAIFDIKNRTHAYYGWHRNQDGYAVEADTMWFFNRYWHPVDDSTNSES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.009G121200 [exp]	0	1
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	3.16	0.7569
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.008G049300 [exp]	6.92	0.7122
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	13.74	0.7580
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	21.84	0.7049
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	29.46	0.7220
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	31.19	0.7140
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.002G151700 [exp]	32.46	0.6861
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	36.66	0.6881
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.004G175900 [exp]	40.09	0.7153	Pt-SKP1.5
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.010G089500 [exp]	42.76	0.6424	LOX1.7

Compare expression of checked genes

Potri.009G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.