Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39080 1300 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1256 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT2G28520 984 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160400 [exp] 1462 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1) Potri.002G028600 [exp] 1206 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.005G234100 [exp] 1202 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017490 [exp] 1269 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10024304 [exp] 1227 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 1181 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1167 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 1029 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 1027 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 110 / 2e-28 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [poplar] [flax] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Potri.009G121400.2 pacid=42772343 polypeptide=Potri.009G121400.2.p locus=Potri.009G121400 ID=Potri.009G121400.2.v4.1 annot-version=v4.1 ATGGCGGAGGCAAGAGCAGGAGGATGCTGTCCGCCGATGGATCTGTTCAGGTCAGAAGCGATGCAATTGGTGCAGCTTATTATCCCTATCGAATCTGCTC ATCACACCGTCTCTTATCTCGGCGACCTCGGTCTCCTCCAATTCAAAGACCTCAATGCAGATAAGAGTCCATTTCAGAGAACTTATGCTGCTCAGATCAA AAAATTTGGAGAGATGGCACGGAAGCTACGGTTTTTCAAGGAGCAAATGGTGAAGGCAGGTATTACACCTTTGACTAAGCCTGGTGCACAAAATGAAATT GATGTGGATGACCTAGAGGTAAAACTTGGGGAACTCGAGGCAGAGCTGGTTGAAATGAATGCAAATAATGATAAATTACAGCGCTCTTATAATGAGCTTG TGGAATATAAGCTTGTCCTCAACAAGGCTGGTGAGTTTTTCTCTTCCGCCCTTAGGAATGCAACTGCTCTGCAAAAGGAATTGGAATCCCAACAAACTGG CGAAGAATCGCTAGATGCTCCTTTATTACAGGACAAAGAAATATTGAACGAGTCATCAAAACAAGTAAAGTTGGGGTTTATCACTGGCCTTGTTCCCAAA GAAAAGTCCATGCCATTTGAAAGAATTATATTTCGTGCTACTAGGGGCAATGTGTACATCAGGCAGGCTGCCGTTGAGGAACCTGTTGTTGATCCTGTTT CTGGAGAGAAGGTTGAGAAGAATGTATATGTTGTCTTTTATTCGGGAGAGAAGGCAAAGACCAAAATACTAAAAATATGTGAAGCTTTTGGTGCAAATCG CTACCCTTTCACTGAGGATTTTGGAAAACAAATTCAAATGATCTCCGAAGTTTCAGGAAGAATCTCTGAGATGAAGGCTGCTATAGATGCAGGATTGTTT CACAGGAGTCATTTGTTGCAGACTATTGGTGATCAATTTGTGCAGTGGAATACTTTGGTGAGGAAGGAGAAATCCATCTACCACACTTTGAACATGCTCA GCCTTGATGTGACCAAGAAGTGTCTTGTTGCTGAGGGGTGGAGTCCTGTTTTTGGTACAAAGCAGATCCAGGATGCATTGCAGCGAGCTGCATTTGATTC CAACTCACAAGTTGGAACAATTTTCCAGGTTTTGCATACAACAGAGTTGCCACCTACATATTTTCGCACAAACAAGTTTACTTCTGCTTTTCAAGATATT GTTGATGCATATGGGGTGGCAAAGTATCAAGAAGCAAATCCTGGTGTGTACACTATAGTTACATTCCCTTTTCTTTTTGCCGTCATGTTTGGTGATTGGG GACATGGAATTTGCATGTTGCTCGCAACATTAGTCTTCATAATCAGGGAAAAGAAACTTTCTGGCCAGAAACTTGGAGATATCACTGAAATGACCTTTGG TGGTCGTTATGTTATTTTGATGATGGCACTCTTCTCGATTTACACTGGTCTTATCTATAATGAATTCTTCTCAGTCCCCTTCGAACTATTTGCTCCATCA GCATATGCATGCCGTGATCTCTCTTGCAGGGATGCTACCACAGATGGTTTGATAAAAGTGCGCCCCACTTACCCATTTGGTGTAGATCCTGTATGGCATG GCAGCCGCAGTGAGCTGCCATTTCTCAACTCTCTGAAGATGAAAATGTCAATCCTTCTTGGGGTTGCTCAAATGAACCTTGGAATCATATTGAGTTATTT CAATGCAACATACTTTAAAAACAGCTTGAATATCTGGTTCCAATTTATCCCCCAAATGATATTTTTAAACAGTTTGTTTGGCTATTTATCACTCCTTATC ATTGTGAAGTGGTCCACTGGTTCACAAGCTGACTTGTACCATGTAATGATATACATGTTCCTGAGTCCAACAGACGAGTTGGGAGAAAATGAGCTTTTTC CTAGGCAAAAAACTGTGCAGCTAGTGCTATTACTATTGGCCCTTGTGTCGGTACCATGGATGCTGCTCCCAAAGCCTTTCCTTTTGAAGAAGCAACACGA AGCTAGGCACCAAGGTGAATCGTACACACCACTTCAGAGCACTGAGGAGTCACTTCAGTTGGAGACAAACCATGATTCACATGGTCATGAGGAATTTGAA TTCAGTGAAGTTTTCGTACATCAGATGATACATACCATTGAGTTTGTACTTGGAGCAGTCTCAAACACAGCTTCCTATCTTCGTTTATGGGCCCTCAGTC TTGCGCACTCGGAGTTGTCTAGTGTATTCTATGAGAAGGTCCTTCTCCTTGCTTGGGGGTACCACAATATTTTTATCCTTGTTATTGGAGCCATCGTCTT TATTTTCGCGACCGTCGGTGTGTTGCTGGTGATGGAAACTCTTAGTGCTTTCTTACATGCCTTGCGTCTGCACTGGGTGGAATTCCAAAACAAATTCTAC GAGGGAGATGGTTACAAGTTTTATCCCTTTTCATTTGCTTTGGTAAATGACGAGGATGAATGA
AA sequence Show only first row Show all	>Potri.009G121400.2 pacid=42772343 polypeptide=Potri.009G121400.2.p locus=Potri.009G121400 ID=Potri.009G121400.2.v4.1 annot-version=v4.1 MAEARAGGCCPPMDLFRSEAMQLVQLIIPIESAHHTVSYLGDLGLLQFKDLNADKSPFQRTYAAQIKKFGEMARKLRFFKEQMVKAGITPLTKPGAQNEI DVDDLEVKLGELEAELVEMNANNDKLQRSYNELVEYKLVLNKAGEFFSSALRNATALQKELESQQTGEESLDAPLLQDKEILNESSKQVKLGFITGLVPK EKSMPFERIIFRATRGNVYIRQAAVEEPVVDPVSGEKVEKNVYVVFYSGEKAKTKILKICEAFGANRYPFTEDFGKQIQMISEVSGRISEMKAAIDAGLF HRSHLLQTIGDQFVQWNTLVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFGTKQIQDALQRAAFDSNSQVGTIFQVLHTTELPPTYFRTNKFTSAFQDI VDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICMLLATLVFIIREKKLSGQKLGDITEMTFGGRYVILMMALFSIYTGLIYNEFFSVPFELFAPS AYACRDLSCRDATTDGLIKVRPTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATYFKNSLNIWFQFIPQMIFLNSLFGYLSLLI IVKWSTGSQADLYHVMIYMFLSPTDELGENELFPRQKTVQLVLLLLALVSVPWMLLPKPFLLKKQHEARHQGESYTPLQSTEESLQLETNHDSHGHEEFE FSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYHNIFILVIGAIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFY EGDGYKFYPFSFALVNDEDE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	0	1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.016G055300 [exp]	1.73	0.7134
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Potri.003G183700 [exp]	21.54	0.6496	J8.2
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.002G090500 [exp]	22.97	0.6199
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	24.37	0.6353
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375500 [exp]	29.18	0.6855
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Potri.012G058900 [exp]	29.69	0.6596
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	31.30	0.6056
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Potri.009G026700 [exp]	37.54	0.6229
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.006G145200 [exp]	46.26	0.6153
AT3G27090			DCD (Development and Cell Deat...		Potri.001G330300 [exp]	64.42	0.6090

Compare expression of checked genes

Potri.009G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.