Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT1G65080 399 / 4e-134 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT2G46470 60 / 2e-09 OXA1L inner membrane protein OXA1-like (.1) AT5G62050 59 / 3e-09 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087950 [exp] 638 / 0 AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.018G140100 [exp] 65 / 4e-11 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 61 / 6e-10 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.001G091800 [exp] 59 / 4e-09 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026414 [exp] 456 / 5e-156 AT3G44370 419 / 9e-141 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Lus10023088 [exp] 61 / 1e-09 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001427 [exp] 53 / 4e-07 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G121800.1 pacid=42771139 polypeptide=Potri.009G121800.1.p locus=Potri.009G121800 ID=Potri.009G121800.1.v4.1 annot-version=v4.1 ATGGCAACTCGCAGTCTTTTACTCTCAACCCTCCGTCGTTCTCGTCCTATCTCCACGCTCTCTCGTCCCCTCACGAACTCTAGCCCTGGCCCTAACCCCA ATTCTCTCACTTCACAACCTTCAAATGCGATATCGTCTCGCAACTCACTTGCTTCTTTTAATTTCCCTTCCTGTCGATCCTTGTCGACTCGCACCGCGTC CGAATCTATCAATTTCGAAGAATTTGCTGATCCTGTCTCCACCGAGACCGAGGATGGAGTTGTTAACGGTATTCTTCCGGTAGACTCAATGATTTGGTTG CTTGATTCATATCATGATCTCACTGGTCTCCCATGGTGGATAATCATTGCTTCATCAACACTGGCAATGAGATTAACGCTCTTTCCTTTACATGTTCTGC AAATGCACAAGATTAAGAAAATCTCTCGGTCTTTTTCTAAATTGCCTCCTCTATTCCCACCACCTCTATCAGGAAGAAGCTATATCGAGCAGATATCTCT TTTTAGAAACGAAAGAAGAGCAATTGGCTGCCCTTCTTATTTATGGTTTCTTGCTTTCCTCTCTGTACAGATACCGTGCTTTCTCTTGTGGATGACCAGT ATTCGACGAATGTGTCTGGATAATCATCCTGGGTTTGATTGTGGTGGCGCTCTATGGTTTCAGAACTTGACTGAACTTCCTCATGGTGTTTTAGGCCCGA TCTTTCCATTTCTTATTGCTGGTTTGCACGGTGTTAATGTTCACTTCTCTTTTGACAGATCTTCTGTTCGGAACACAAGTGGCCTATTGGGCTTATTATC AGAATACTACAGGAAATATCTGAATTTTATGATGCTGCCTTTGTTTTTCATTGGTTACTGCATTCCACAGGGAAGTCTAGTTTACTGGGTTACCAACAGT TCATTAACTGCAATACAGCAAGTATCTCTCAAACTTCCTGTTGTTCGTGCAAAATTAGGGTTACTGGACAAGGATTTTCCAAAAGCACCTGCACTTTCTG CAGAAATGGTTGCACATGAACTGCGCAAAGTTTCTCCAGAAAATTTGTCACCTCATGAACTACTAGTACTGTCTGTTAAACTCTTATCCAGTGGGCATAG AGCCAGAGCTATTCCTTTGTTGCAAATGGCACTTGAGAAGGACTCTGGCCATGTAAAGGCTTTAATTGTTATGGGGCAGGCTCGACTGCAAGAAGGACTC CATGCAGAGGCAACTGATCATTTAGAGCGTGCTATTTCCAATCTCATTCTTACTGGCCATCCAACAGCGGAGGATGTGGATCATCTTATTCTTGCATCAC AATGGGCAGGTGTTGCCTGTATTCGTCAGGGGAAGAATGCAGAAGGAATTATGCACCTAGAAAGAATCACAAGTCTGGAAGAACCAGAGGACCCAAAGAG CAAAGCACACTATTTTGATGGTTTATTATTACTTGCGAGTGCTTTAAGTAAGGAAGATCGCAATGCTGAGGCTGTCAAGTATCTGCGCTTAGTTGTTGCT TATGATCCTTCCCGCAAGGAATTCTTGGACCAATGCTTATGA
AA sequence Show only first row Show all	>Potri.009G121800.1 pacid=42771139 polypeptide=Potri.009G121800.1.p locus=Potri.009G121800 ID=Potri.009G121800.1.v4.1 annot-version=v4.1 MATRSLLLSTLRRSRPISTLSRPLTNSSPGPNPNSLTSQPSNAISSRNSLASFNFPSCRSLSTRTASESINFEEFADPVSTETEDGVVNGILPVDSMIWL LDSYHDLTGLPWWIIIASSTLAMRLTLFPLHVLQMHKIKKISRSFSKLPPLFPPPLSGRSYIEQISLFRNERRAIGCPSYLWFLAFLSVQIPCFLLWMTS IRRMCLDNHPGFDCGGALWFQNLTELPHGVLGPIFPFLIAGLHGVNVHFSFDRSSVRNTSGLLGLLSEYYRKYLNFMMLPLFFIGYCIPQGSLVYWVTNS SLTAIQQVSLKLPVVRAKLGLLDKDFPKAPALSAEMVAHELRKVSPENLSPHELLVLSVKLLSSGHRARAIPLLQMALEKDSGHVKALIVMGQARLQEGL HAEATDHLERAISNLILTGHPTAEDVDHLILASQWAGVACIRQGKNAEGIMHLERITSLEEPEDPKSKAHYFDGLLLLASALSKEDRNAEAVKYLRLVVA YDPSRKEFLDQCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	0	1
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Potri.012G060400 [exp]	2.44	0.8253
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.011G146600 [exp]	2.44	0.7817	ARRO.1
AT5G52545			unknown protein		Potri.004G079400 [exp]	3.31	0.8380
AT5G55760		SRT1	sirtuin 1 (.1)		Potri.001G368100 [exp]	4.89	0.7672
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	5.65	0.7730
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Potri.007G019000 [exp]	6.16	0.7113
AT1G15780			unknown protein		Potri.003G013300 [exp]	7.41	0.7682
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	8.94	0.7454
AT2G19930			RNA-dependent RNA polymerase f...		Potri.007G081300 [exp]	10.39	0.7767
AT4G00231		MEE50	maternal effect embryo arrest ...		Potri.014G074900 [exp]	13.85	0.7201

Compare expression of checked genes

Potri.009G121800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.