Plant FIBer expression Database

Potri.009G121902 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21385 130 / 5e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G160800
[exp]
150 / 4e-46 AT2G21385 459 / 1e-163 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017494
[exp]
121 / 2e-34 AT2G21385 389 / 3e-135 unknown protein
Lus10028792
[exp]
120 / 4e-34 AT2G21385 375 / 2e-130 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G121902.1 pacid=42772808 polypeptide=Potri.009G121902.1.p locus=Potri.009G121902 ID=Potri.009G121902.1.v4.1 annot-version=v4.1
ATGATTCAAAGGGAGCGAGAAGGGCAACTAGACGAAGGGCTCCTTTCAGAAGTTAGTGCACAACTACCACAAGCAAAAGAAGACGGGGACAAGCCAGGGC
TTGAGGCCATGTTGCTAAAGGTTCTGCAACTCTATGCTTCCGGAGAGGAAGTTTTGAAGGCTGGGCAGTTTCTGGAGACTATAATCGAAGCTCCTGAAGA
AAAATGGAACAAGATTTTGCTCAATGGAATGACTGTTGGCAAAGGGGGAATTTCTCCTGAGGAACACCACGCAGTCATTAAAGAAACGAATTGA
AA sequence
>Potri.009G121902.1 pacid=42772808 polypeptide=Potri.009G121902.1.p locus=Potri.009G121902 ID=Potri.009G121902.1.v4.1 annot-version=v4.1
MIQREREGQLDEGLLSEVSAQLPQAKEDGDKPGLEAMLLKVLQLYASGEEVLKAGQFLETIIEAPEEKWNKILLNGMTVGKGGISPEEHHAVIKETN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21385 unknown protein Potri.009G121902
[exp]
0 1
Potri.001G055675
[exp]
1.73 0.8599
Potri.001G121350
[exp]
5.00 0.8418
AT2G42410 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) Potri.002G041700
[exp]
5.47 0.8189
AT3G13410 unknown protein Potri.003G223601
[exp]
7.74 0.8587
AT2G43980 ATITPK4 "inositol 1,3,4-trisphosphate ... Potri.007G144701
[exp]
8.12 0.7690
AT5G41700 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN... Potri.013G158600
[exp]
8.94 0.7360
Potri.008G164600
[exp]
9.16 0.8087
AT1G75810 unknown protein Potri.005G241200
[exp]
12.96 0.7324
AT3G61640 AGP20, ATAGP20 arabinogalactan protein 20 (.1... Potri.012G032000
[exp]
13.96 0.7010
AT3G50860 Clathrin adaptor complex small... Potri.005G122900
[exp]
16.97 0.7799

Potri.009G121902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.