Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 1380 / 0 Kinesin motor family protein (.1) AT2G21380 1288 / 0 Kinesin motor family protein (.1) AT1G21730 635 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 632 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 609 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 335 / 7e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 297 / 2e-86 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G24170 286 / 4e-81 ATP binding microtubule motor family protein (.1) AT1G18370 281 / 9e-80 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 279 / 3e-79 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161100 [exp] 1785 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.002G081300 [exp] 679 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G060400 [exp] 673 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 659 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G040700 [exp] 347 / 5e-101 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 301 / 1e-87 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G136600 [exp] 294 / 2e-84 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 293 / 3e-84 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 282 / 5e-80 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017969 [exp] 1549 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 1269 / 0 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 1265 / 0 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 1186 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10018145 [exp] 649 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 648 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016236 [exp] 549 / 2e-178 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 538 / 2e-174 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010441 [exp] 343 / 2e-100 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 343 / 1e-99 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.009G122100.3 pacid=42771403 polypeptide=Potri.009G122100.3.p locus=Potri.009G122100 ID=Potri.009G122100.3.v4.1 annot-version=v4.1 ATGGCGTCATCTTCCAGAGCGAGAAGCAGGTCTCCATTCTCGCACCGGAAACCGTCAAGTTCATACTCTTCAGCTTCTTCAACAACCACTTCTTATAATA ACAGGCTGATTCCTCGCTCTTGCTCGACTTCCGCTTCTTCATTTTTCGGTTCGAGATCCGTGACGCCAAATCGAGCTCGGTCTGATTCAATGCAATACGG CGGTCTACGTGGTGGTGGTCAAACCCCTGTCGGGTTCGGGCCGGAGGAGTTAATTGCTGAACCGTTTGATCAACCGAGGAGTGGTGGTGATAGCATTTCG GTTACTATTCGGTTTAGGCCGTTGAGTGAAAGGGAGTTCCAGAGAGGGGATGAGATAGCATGGTATGCGGATGGGGATAAGATTGTCAGGAACGAGTACA ATCCAGCGACTGCTTATGCATTCGATAAGGTGTTTGGACCACACACTGCATCTCAAGAGGTGTATGAGGTTGCTGCAAAACCTGTAGTCAAGGCTGCAAT GGAAGGTGTTAATGGAACTGTTTTTGCGTATGGTGTTACTAGTAGTGGAAAGACGCATACTATGCATGGAGACCAAAATTCACCTGGTATCATACCACTG GCCATAAAGGATGTTTTCAGTATTATCCAAGAGACTCCAGGAAGAGAGTTCCTGCTACGGGTGTCCTATCTTGAAATTTACAATGAGGTGATAAATGACT TGCTTGATCCAACAGGTCAAAATTTGCGTGTTAGAGAAGATGCACAGGGCACCTATGTTGAGGGTATAAAGGAAGAAGTCGTTTTGTCTCCTGGGCATGC ACTTTCTTTCATTGCTGCCGGAGAAGAGCATCGCCATGTTGGTTCAAATAATTTTAATCTGTTCAGCAGCCGAAGTCACACCATATTTACTCTGATGATT GAAAGTAGTGATCATGGTGACGAATATGATGGAGTGATTTTCTCTCAACTTAATCTGATTGATCTAGCTGGATCTGAGAGTTCAAAAACTGAAACAACTG GACTAAGGAGAAAGGAAGGATCTTACATAAACAAAAGCCTTCTAACTCTTGGAACTGTTATTGGAAAACTGAGTGAAGGAAGAGCATCTCATGTTCCGTA TCGAGATTCCAAACTTACTCGCCTTTTGCAGTCCTCGTTGAGCGGGCATGGGCATGTTTCGCTTATTTGTACCGTCACTCCTGCATCAAGTAACATGGAA GAAACTCATAATACATTGAAGTTTGCTAGCAGGGCAAAGCGGGTTGAAATCTATGCCTCACGCAATAAGATAATTGATGAGAAATCTTTGATCAAGAAGT ATCAAAAAGAAATCTCAATCCTCAAAGAGGAACTTGATCAGTTAAGACAGGGGATGCTTGTTGGTGTCAGTCATGAAGAGATTCTGAGCTTAAGGCAAAA GTTGGAGGAAGGTCAAGTGAAGATGCAGTCAAGATTGGAGGAGGAAGAAGAAGCCAAGGCTGCTCTCATGAGTAGGATCCAGAGGCTAACCAAACTCATA CTTGTCTCTACAAAGAATACGATTCCTGGATTGCCTGATGTTCCAGGTCATCAGAGGAGTCATTCGGATGATAAATTGGATTTGCGAGAAGGTGCTTCAC TTGCAGAAAATGAGAATCAGAAGGACTCTCCATCTTCTTCTTCTTTGATTGCATCAGATCTAACTAGTGAATTTAAACATAGAAGATCTTCCAGCAAGTG GAATGAAGAACTCTCACCAGCTAGCAGTGCGGTTACGGAAACGACTCAAGCAGGCAACCTTATGAATGCTTCAAAACTGGCACCAGGCGGGATGACCCAA GACCAGATGGACCTTCTTGTGGAGCAGGTTAAAATGCTTGCTGGAGAGATTGCATTCAGCACCAGTACCCTAAAGCGCCTGGTAGAGCAGTCTGTAAATG ATCCTGATAACTCGAAAATTCAGATCCAGAACTTGGAACGAGAGATCATGGAAAAGAAGAGGCAAATGGGAGTCTTGGAACAACGTATTATTGAAAGTGG TGAGGCTTCAATTGCCAATGCCTCATTGGTTGATATGCAGCAGACAGTAATGAGATTGATGACCCAATGTAATGAGAAGGCTTTTGAGCTGGAGATAAAA TCAGCTGACAACCGCATCCTCCAAGAACAGCTTCAGAATAAGTGCTCCGAAAACAAAGAATTGCAAGAAAAGGTAACTCTCCTGGAGCAGCGGTTCGCTT CACTCTCTGGTGACAAAGCACCACTAAACTCCGAACACAATGCATCTGAAGAATATGTGGATGAATTGAAAAAGAAAGTTCAGTCCCAGGAGATTGGGAA TGAAAAGCTAAAGATCGAACAGGTCCAGCTTTCCGAGGAGAATAGTGGATTACGGGTCCAAAATCAGAAATTGTCTGAAGAAGCTTCTTATGCAAAGGAA CTGGCCTCTGCTGCTGCAGTTGAGCTGAAGAATTTAGCTGGTGAAGTGACCAAGCTCTCATTACAGAATGCAAAATTGGAACAAGAATTGCTGGCTGCCC GAGAATCCGTGCATTCTAGAGGTGCTGGCATGCAAACAATTAATGGAGTTAACCGCAAGTACTATGATGCCACAAGACCAGGGAGGAAGGGGCGGTTCTC TGGCAGAGGAAATGAGATTTCAGGAATGCATTCTGATGACTTCGAGTTGTGGAATCTGGATCCAGATGATTTAAAAATGGAACTTCAGGCAAGAAAACAA CACGAAGCAGCACTTGAGGCATCCTTGGCTGAAAAGGAATTCATAGAAGATGAATACAGGAAAAGGTGTGAAGAGGCCAAGAAAAGGGAGGAGGCTCTGG AAAATGACTTAGCAAATATGTGGGTGCTTGTTGCTAAGTTAAAGAAAGATGGGAGTGCTATCCCTGGGATGAATGCTGATGAAAGGCATGGTGATGGTAT AGATCATGCCAGGGATCCCAAAATGAATGGGGTCGAAGTTGATCAAAATAATGCTGTAAAAGAGAGACAAGATTTGGATGCATCACAAGAAGTTGATGGA ACTCCTAAGGAAGAGCCCCTAGTTGTTCGGTTGAAGGCGCGGATGCAAGAGATGAAGGAAAAAGAGCTCAAATACCTGGGAAATGGAGATGCCAATTCCC ACGTGTGCAAAGTATGTTTTGAATCACCAACAGCAGCAATTCTTCTCCCCTGTCGACATTTTTGTTTGTGTAAATCTTGTTCGCTTGCTTGTTCTGAGTG CCCGATTTGTCGCACAAAGATTGCAGATAGGCTCTTTGCATTCACTTGA
AA sequence Show only first row Show all	>Potri.009G122100.3 pacid=42771403 polypeptide=Potri.009G122100.3.p locus=Potri.009G122100 ID=Potri.009G122100.3.v4.1 annot-version=v4.1 MASSSRARSRSPFSHRKPSSSYSSASSTTTSYNNRLIPRSCSTSASSFFGSRSVTPNRARSDSMQYGGLRGGGQTPVGFGPEELIAEPFDQPRSGGDSIS VTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDKVFGPHTASQEVYEVAAKPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPL AIKDVFSIIQETPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMI ESSDHGDEYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGRASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNME ETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQKEISILKEELDQLRQGMLVGVSHEEILSLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLI LVSTKNTIPGLPDVPGHQRSHSDDKLDLREGASLAENENQKDSPSSSSLIASDLTSEFKHRRSSSKWNEELSPASSAVTETTQAGNLMNASKLAPGGMTQ DQMDLLVEQVKMLAGEIAFSTSTLKRLVEQSVNDPDNSKIQIQNLEREIMEKKRQMGVLEQRIIESGEASIANASLVDMQQTVMRLMTQCNEKAFELEIK SADNRILQEQLQNKCSENKELQEKVTLLEQRFASLSGDKAPLNSEHNASEEYVDELKKKVQSQEIGNEKLKIEQVQLSEENSGLRVQNQKLSEEASYAKE LASAAAVELKNLAGEVTKLSLQNAKLEQELLAARESVHSRGAGMQTINGVNRKYYDATRPGRKGRFSGRGNEISGMHSDDFELWNLDPDDLKMELQARKQ HEAALEASLAEKEFIEDEYRKRCEEAKKREEALENDLANMWVLVAKLKKDGSAIPGMNADERHGDGIDHARDPKMNGVEVDQNNAVKERQDLDASQEVDG TPKEEPLVVRLKARMQEMKEKELKYLGNGDANSHVCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIADRLFAFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	0	1
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	1.41	0.9174	Pt-MOR1.1
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	2.64	0.9248
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	5.47	0.9122	ATK2.1
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	6.24	0.9170
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	6.92	0.8938
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	7.74	0.9022
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	7.74	0.8938
AT2G29400		PP1-AT, TOPP1	type one protein phosphatase 1...		Potri.001G245700 [exp]	9.00	0.8851	TOPP1.2
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	9.48	0.8825
AT5G54780			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G419100 [exp]	10.58	0.8956

Compare expression of checked genes

Potri.009G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.