Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21350 161 / 2e-48 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G39040 140 / 1e-39 RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017965 [exp] 185 / 7e-57 AT2G21350 148 / 2e-43 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10028787 [exp] 152 / 5e-44 AT4G39040 124 / 8e-34 RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.009G122500.2 pacid=42771353 polypeptide=Potri.009G122500.2.p locus=Potri.009G122500 ID=Potri.009G122500.2.v4.1 annot-version=v4.1 ATGGCGGTGGCTATAACATCCTCATCGACAACCCCCCATGTCCTCCACCATCTTCTCCGTCCACCACCATCTCAACCACCACTGCTCTCATACTTCTTAA GACCAATTTGCACCACCACCACAACAACGAAAACCATTCTCTCAAAATCCGACAAAACCCCAAGTCAAAAAACTAACACTATCCTCTTCTCTTCACTCTC TTCTCTCCCCAATTCTCCTCTCCTCTTCTCCCTTCGCTCTTTCCCTTGCTTTCAAAAAGCTCACAACCACTCTCTCACCTTACAGGAACTAGAAGAAGAA GACCAAAGAGAAGAAGAAAAAGGTGAAGGCTTTATCGATAATGAAATTGAAAATGGTGATAAAGAGGACGATATTGAGGGTGAAAGTGATAATTTGGAGT TGGAAGATAGTGTTGTTGATGTTTCTGGTGAGGGTTCCACTAAAGAGGGTTTGAAGAGAAATGGGGTAAAGGTACCGACTTTGACAGTGAAGGAAAAGAA GGAATTAGCATCTTATGCTCATGGATTGGGAAAGAAGCTAAAGTCTCAGTTGATTGGCAAGTCTGGTTTTACTGATAATGTTGCAACCTCTTTTATTGAG ACCCTTGAAGCCAATGAGCTTTTAAAGATTAAAATACACAGGACTTGTCCAGGGGAGCTAGAGGATGTGGTGCGACGATTGGAGGAAGCAACTGGTTCAG TGGTAGTTGGTCAAATTGGTCGGACTGTCATTATATATCGGCCTAGTCTCACTAAAATGAAGGCCGAGGAGAAAAGGCTACAGGCTCGTAGAGTTTATGT GAGAAAAGCACCAAAATTGATGTCTGTGCCATTGTCGAGAGGAGAGCCAAGGCGATTTTCTGGGCATGGTCGTCGAGGAAGCAGCAGGGTATAA
AA sequence Show only first row Show all	>Potri.009G122500.2 pacid=42771353 polypeptide=Potri.009G122500.2.p locus=Potri.009G122500 ID=Potri.009G122500.2.v4.1 annot-version=v4.1 MAVAITSSSTTPHVLHHLLRPPPSQPPLLSYFLRPICTTTTTTKTILSKSDKTPSQKTNTILFSSLSSLPNSPLLFSLRSFPCFQKAHNHSLTLQELEEE DQREEEKGEGFIDNEIENGDKEDDIEGESDNLELEDSVVDVSGEGSTKEGLKRNGVKVPTLTVKEKKELASYAHGLGKKLKSQLIGKSGFTDNVATSFIE TLEANELLKIKIHRTCPGELEDVVRRLEEATGSVVVGQIGRTVIIYRPSLTKMKAEEKRLQARRVYVRKAPKLMSVPLSRGEPRRFSGHGRRGSSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21350			RNA-binding CRS1 / YhbY (CRM) ...		Potri.009G122500 [exp]	0	1
AT5G15390			tRNA/rRNA methyltransferase (S...		Potri.004G122300 [exp]	1.73	0.9739
AT2G38025			Cysteine proteinases superfami...		Potri.016G110400 [exp]	4.47	0.9727
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	7.07	0.9613
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.005G105800 [exp]	7.48	0.9677
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.006G205000 [exp]	10.58	0.9619
AT3G09250			Nuclear transport factor 2 (NT...		Potri.016G105600 [exp]	12.40	0.9605
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.002G029600 [exp]	12.48	0.9600
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	12.72	0.9663
AT1G54500			Rubredoxin-like superfamily pr...		Potri.005G049000 [exp]	12.84	0.9673
AT1G76730			NagB/RpiA/CoA transferase-like...		Potri.005G194800 [exp]	15.49	0.9574

Compare expression of checked genes

Potri.009G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.