Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21340 683 / 0 MATE efflux family protein (.1.2) AT4G39030 588 / 0 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1) AT2G38330 90 / 9e-19 MATE efflux family protein (.1) AT4G38380 82 / 2e-16 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122600 [exp] 701 / 0 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 81 / 5e-16 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.004G183600 [exp] 76 / 3e-14 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 76 / 3e-14 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 65 / 1e-10 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.001G266900 [exp] 61 / 1e-09 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018080 [exp] 684 / 0 AT2G21340 667 / 0.0 MATE efflux family protein (.1.2) Lus10017498 [exp] 611 / 0 AT2G21340 610 / 0.0 MATE efflux family protein (.1.2) Lus10017964 [exp] 607 / 0 AT2G21340 622 / 0.0 MATE efflux family protein (.1.2) Lus10042074 [exp] 600 / 0 AT2G21340 603 / 0.0 MATE efflux family protein (.1.2) Lus10041955 [exp] 592 / 0 AT2G21340 598 / 0.0 MATE efflux family protein (.1.2) Lus10026829 [exp] 83 / 2e-16 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 82 / 3e-16 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 82 / 3e-16 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10012227 [exp] 71 / 8e-13 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10029517 [exp] 61 / 1e-09 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.009G122900.2 pacid=42771417 polypeptide=Potri.009G122900.2.p locus=Potri.009G122900 ID=Potri.009G122900.2.v4.1 annot-version=v4.1 ATGCAAATCAAAACCCTAATTCATTCTTCAACAATTCCATTTCAAAACCCTAATTTTAAAAAACATCCACAACCATCAATTCTATTAAAAAACCCACCTA TCCATCTCCTTCAAAGTCCCAAAGTTCCTGCAAAATTAAACATTTTGACACCAAGAAATCATCTTTATGGTTTGAAAGCCAATCTTAGTAGCCAAAGTCG AGAACTTTTCGATACTAACAATGAAATTGAGGGAGAAAATGACAGTAAAACTGGCTCAATTTTGGAAGAAGAGGAGATAAAAGTGGATATGAATAGAGAG GGATTGGAGAATCAGAGTTTATGGAGTCAAATAAAGGAGATTGTTTTGTTTACAGGACCTGCTACAGGGCTTTGGTTATGTGGGCCATTAATGAGTCTAA TTGATACTGTGGTTATTGGTCAAGGGAGTTACATTGAACTTGCCGCTTTAGGACCTGCGACGGTTTTATGTGATTATATGAGTTATGTGTTCATGTTCCT TTCAATTGCCACTTCGAATATGGTTGCAACTTACCTTGCCAGACGGGATAAAAATCAAGTGCAGCATCAAATATCTATCCTTCTCTTTGTCGGGATGACT TGTGGCTTGCTTATGCTCTTGTTTACAAGATTATTTGGTTCATGGGCACTAACTGCTTTCTCAGGACCAAAAAATGCACAAATTCTACCTGCAGCAAATA CATACGTTCAGATTCGAGGCCTAGCATGGCCTGCAGTTCTTGTAGGATGGGTTGCTCAAAGTGCAAGTCTCGGCATGAAAGATTCGTGGGGGCCTCTGAA GGCTTTGGCGGTTTCTAGTGTTGTAAATGGTGTTGGTGATGTAGTCCTCTGCAGCTTTTTAGGCTATGGAATTGCTGGTGCTGCATGGGCCACAATGGTG TCACAGGTTATTGCAGCTTATATGATGATAGAAGCTTTGAACAAAAAAGGATACAATGCATTTTCCATCTCTGTTCCAACACCTGACGAAATCCTGACAG TAATTGGGCTTGCTGCTCCAGTGTTTGTGACAATGATATCAAAGGTGGCTTTCTATTCTCTCATGATATATTTTGCGACATCTATGGGCACACATTCCGT GGCTGCTCATCAGGTCATGCTTCAAATAATGGGTATGTGCACAGTAATGGGCGAGCCTCTCTCACAAACTGCACAATCATTTATGCCTGAGTTGATATAT GGTGTCAATCGAAGTTTGGAAAAGGCTCGAAGGCTGCTAAAATCACTTGTCACAATTGGGGCTACAATGGGATTGCTTCTAGGGACCATTGGTACATTTG CTCCTTGGTTGTTCCCAAATATCTTTACACGCGATCAGAAGGTCATACAGGAGATGTACAAAGTGCTGTTACCGTTCTTTATGGCAATTGCTGTGACACC TAGCATTCATTGCCTCGAGGGGACACTGTTGGCTGGACGGGATCTTAGATTCCTTAGCTTTTCAATGACTGGATGCTTTTCTTTGGGTGCTATTGTACTG ATGCTTTTTAGCAGGAGAGGATATGGTTTGCCTGGCTGTTGGTATGCACTTGTAGGATTTCAATGGGCCCGATTTTTCCTTTCTCTTCGGCGACTTCTTT CTCCTGATGGCATACTTTTCTCCGAGGACTTGAGCCGCTATAAAATGGAGAAGCTGAAAGTTACTTAG
AA sequence Show only first row Show all	>Potri.009G122900.2 pacid=42771417 polypeptide=Potri.009G122900.2.p locus=Potri.009G122900 ID=Potri.009G122900.2.v4.1 annot-version=v4.1 MQIKTLIHSSTIPFQNPNFKKHPQPSILLKNPPIHLLQSPKVPAKLNILTPRNHLYGLKANLSSQSRELFDTNNEIEGENDSKTGSILEEEEIKVDMNRE GLENQSLWSQIKEIVLFTGPATGLWLCGPLMSLIDTVVIGQGSYIELAALGPATVLCDYMSYVFMFLSIATSNMVATYLARRDKNQVQHQISILLFVGMT CGLLMLLFTRLFGSWALTAFSGPKNAQILPAANTYVQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVSSVVNGVGDVVLCSFLGYGIAGAAWATMV SQVIAAYMMIEALNKKGYNAFSISVPTPDEILTVIGLAAPVFVTMISKVAFYSLMIYFATSMGTHSVAAHQVMLQIMGMCTVMGEPLSQTAQSFMPELIY GVNRSLEKARRLLKSLVTIGATMGLLLGTIGTFAPWLFPNIFTRDQKVIQEMYKVLLPFFMAIAVTPSIHCLEGTLLAGRDLRFLSFSMTGCFSLGAIVL MLFSRRGYGLPGCWYALVGFQWARFFLSLRRLLSPDGILFSEDLSRYKMEKLKVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21340			MATE efflux family protein (.1...		Potri.009G122900 [exp]	0	1
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.014G057400 [exp]	7.21	0.6446
AT4G01210			glycosyl transferase family 1 ...		Potri.014G092500 [exp]	13.26	0.5989
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	13.56	0.6583
AT1G17330			Metal-dependent phosphohydrola...		Potri.007G072000 [exp]	18.52	0.6313
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.013G047800 [exp]	26.38	0.6488
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	27.23	0.5995
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	27.33	0.6147
AT3G11210			SGNH hydrolase-type esterase s...		Potri.010G189300 [exp]	27.94	0.6071
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.019G071700 [exp]	37.49	0.5903	Pt-HSDH.1
AT1G06590			unknown protein		Potri.004G081200 [exp]	50.51	0.5792

Compare expression of checked genes

Potri.009G122900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.