Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SQS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34640 639 / 0 ERG9, SQS1 squalene synthase 1 (.1) AT4G34650 612 / 0 SQS2 squalene synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161200 [exp] 722 / 0 AT4G34640 659 / 0.0 squalene synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017499 [exp] 681 / 0 AT4G34640 676 / 0.0 squalene synthase 1 (.1) Lus10028786 [exp] 676 / 0 AT4G34640 671 / 0.0 squalene synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00494 [poplar] [flax] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Potri.009G123100.1 pacid=42770769 polypeptide=Potri.009G123100.1.p locus=Potri.009G123100 ID=Potri.009G123100.1.v4.1 annot-version=v4.1 ATGGGGAGTTTGGGAGCGATATTAAAACACCCAGCTGATTTATACCCACTATTGAAGCTGAAAATGGCTGCTAAACATGCTGCAAAACAGATCCCGTCTG AACCTCACTGGGCTTTCTGTTATTCCATGCTTCATCGGGTCTCTCGTAGTTTTGCTTTCGTTATTCAACAGCTTGGCACAGAACTCCGTAACGCTGTGTG CATTTTTTACTTGGTTCTTCGAGCCCTTGACACTGTTGAGGATGATACAAGCATACCTACAGATGTCAAAGTACCTATTCTGATAGCTTTTCACCGCCAC ATTTATGATCGCAATTGGCATTTCTCATGTGGTACCAATGACTACAGGGTTCTTATGGACCAGTTCCATGATGTTTCAACTGCTTTTCTAGAGCTTGAAA AAGGTTACCAGGAGGCAATTGAGGATATTACCAAAAGAATGGGTGCAGGGATGGCAAAGTTTATCTGCAAGGAGGTGGAAACCATTGATGACTATGATGA ATATTGCCACTATGTAGCAGGACTTGTTGGACTGGGCTTGTCCAAGCTTTTCCATGCCTCTGAATTAGAAGATTTGGCTTCAGATAGCATCTCCAATTCA ATGGGATTGTTTCTTCAGAAAACAAACATTATTCGTGATTATCTGGAGGACATAAATGAGATACCTATGTCACGCATGTTTTGGCCTCGCGAGATTTGGA GTAAATATGTCAACAAACTTGAGGACTTGAAATATGAAGAGAACTCGGTCGAGGCAGTACAGTGCTTGAATGACATGGTTACCAATTCCTTGATACATGT GGATGATTGCTTGAAATACATGTCTGCATTGCGGGAACCTGCTATATTTCGGTTTTGTGCTATCCCTCAGGTCATGGCTATCGGAACCCTAGCAATGTGC TACAACAACATCAATGTCTTCAGAGGTGTAGTGAAGATGAGACGAGGTCTCACCGCTCAAATTTTTCATCGAACGAAAACAATGGCCGATGTCTATGGAG CTTTCTTTGACTTCTCTTGTATGCTGAAGTCCAAGGTTGACAGGAACGATCCTAATGCAACAAAAACATTGAGCAGTCTGGAAGCAGTACAAAAAACTTG CAGGGAATCCGGGGCTTTAAACAAAAGGAAATCTTACATACTTAGGAATGAGCTAAAATATAATTCTGTTCTGATCGTCCTCCTCTTCATTATATTGTCT ATTATTTTTGCTTATCTCTCTGCCAACCGATCAAGTTACTAG
AA sequence Show only first row Show all	>Potri.009G123100.1 pacid=42770769 polypeptide=Potri.009G123100.1.p locus=Potri.009G123100 ID=Potri.009G123100.1.v4.1 annot-version=v4.1 MGSLGAILKHPADLYPLLKLKMAAKHAAKQIPSEPHWAFCYSMLHRVSRSFAFVIQQLGTELRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRH IYDRNWHFSCGTNDYRVLMDQFHDVSTAFLELEKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASELEDLASDSISNS MGLFLQKTNIIRDYLEDINEIPMSRMFWPREIWSKYVNKLEDLKYEENSVEAVQCLNDMVTNSLIHVDDCLKYMSALREPAIFRFCAIPQVMAIGTLAMC YNNINVFRGVVKMRRGLTAQIFHRTKTMADVYGAFFDFSCMLKSKVDRNDPNATKTLSSLEAVQKTCRESGALNKRKSYILRNELKYNSVLIVLLFIILS IIFAYLSANRSSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	0	1	SQS1.2
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	1.41	0.7893
AT5G44400			FAD-binding Berberine family p...		Potri.011G161600 [exp]	4.00	0.7798
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.012G020200 [exp]	5.47	0.8168	Pt-LAS.3
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.006G094700 [exp]	8.30	0.7857
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	15.16	0.7275
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Potri.002G155000 [exp]	18.02	0.7742
AT4G20820			FAD-binding Berberine family p...		Potri.001G461500 [exp]	18.97	0.6835
AT3G11800			unknown protein		Potri.004G146800 [exp]	21.49	0.6877
					Potri.015G139966 [exp]	23.66	0.7654
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	25.09	0.6995

Compare expression of checked genes

Potri.009G123100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.