Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34660 566 / 0 SH3 domain-containing protein (.1.2.3) AT4G18060 352 / 2e-120 SH3 domain-containing protein (.1) AT1G31440 303 / 6e-100 SH3 domain-containing protein (.1) AT4G39020 130 / 1e-36 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161300 [exp] 674 / 0 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 354 / 2e-121 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 344 / 3e-117 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.001G128800 [exp] 319 / 3e-107 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 296 / 3e-98 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028783 [exp] 602 / 0 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 601 / 0 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 557 / 0 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 550 / 0 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10004584 [exp] 354 / 2e-121 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10015253 [exp] 354 / 2e-121 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 352 / 1e-120 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10028785 [exp] 338 / 1e-116 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3) Lus10033292 [exp] 305 / 2e-101 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 280 / 1e-90 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [poplar] [flax] SH3 PF14604 [poplar] [flax] SH3_9 Variant SH3 domain
Representative CDS sequence Show only first row Show all	>Potri.009G123200.1 pacid=42771729 polypeptide=Potri.009G123200.1.p locus=Potri.009G123200 ID=Potri.009G123200.1.v4.1 annot-version=v4.1 ATGGAAGCGATACGAAAACAAGCCACGAAACTTAGGGAACAGGTCGCTAAGCAACAACAGGCTGTTCTCAAGCAGTTTGGGGGTGGTGGATATGGAGGTT CAGACACACTTGTTACTGATGAAGCAGAACTCCATCAGCACCAGAAACTTGAGAGGCTTTACATATCAACACGTGCTGGCAAGCATTTTCAAAGGGATAT TGTTCGTGGTGTAGAAGGATATATTGTCACAGGATCCAAACAAGTTGAAATAGGAACAAAGTTTTCAGAAGATAGCAGGAAATATGGTGCCGAAAATACA TGTACTAGTGGTAATACATTGTCAAAGGCCGCAGTGAATTATGGTCGTGCCCGTGCTCAGATGGAGAAGGAACGTGGGAATCTGCTGAAAGCTCTTGGTA CACAGGTAGCTGAGCCATTAAGAGCTATGGTAATGGGAGCTCCATTGGAAGATGCGCGGCATCTTGCTCAACGTTATGACAGGATGCGACAAGAAGCAGA AGCTCAGGCTATTGAAGTTTCCAAGCGGCAGGCAAAAGTGAGAGAAATGCCAGGCAGTCCTGAACTTGCAATGAAGTTAGAATCTGCAGAAACAAAGCTG CAAGATCTGAAGTCAAACATGTCAATATTGGGGAAGGAAGCGGCTGCAGCAATGGCTGCTGTTGAAGCCCAACAACAGAGGTTAACTCTTCAGAGACTTA TTGCTATGGTTGAAGCTGAACGTGCTTATCACCAGAGAGTCCTTCAGATACTAGATCAGCTTGAAGGAGAGATGACATCAGAACGACAACGAATTGAAGC GCCTCCCACCCCAAGTGCAGAGAACAGCATGCCTCCACCTCCATCATATGAAGAAGTGAACGGCATGTATGCTTCCCAAGCACATAACGGAACAACGGAC AGCATCAGTTACTTTTTAGGGGAGGTCATGCATTCATATCAAGGACAATCTGATGTGGAGCTGACTTTGTCAATTGGTGACTATGTTGTTGTTCGAAAGG TGACAAACAATGGCTGGGCTGAAGGGGAATGCAAAGGTAAAGCAGGCTGGTTCCCATATGGGTACATTGAAAGAAGGGATCGTGTCCTTGCCAGCAAAAT AGCTGAAGTGTTTTAG
AA sequence Show only first row Show all	>Potri.009G123200.1 pacid=42771729 polypeptide=Potri.009G123200.1.p locus=Potri.009G123200 ID=Potri.009G123200.1.v4.1 annot-version=v4.1 MEAIRKQATKLREQVAKQQQAVLKQFGGGGYGGSDTLVTDEAELHQHQKLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKFSEDSRKYGAENT CTSGNTLSKAAVNYGRARAQMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVREMPGSPELAMKLESAETKL QDLKSNMSILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMTSERQRIEAPPTPSAENSMPPPPSYEEVNGMYASQAHNGTTD SISYFLGEVMHSYQGQSDVELTLSIGDYVVVRKVTNNGWAEGECKGKAGWFPYGYIERRDRVLASKIAEVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	0	1
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	9.16	0.8369
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	9.16	0.8556
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	10.48	0.8746	CYP51.2
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	17.49	0.8044
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	18.16	0.8417
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145600 [exp]	18.38	0.8234
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	21.14	0.8575
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168500 [exp]	23.32	0.8202
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	24.45	0.8600
AT2G12646			PLATZ transcription factor fam...		Potri.006G060500 [exp]	25.45	0.8037

Compare expression of checked genes

Potri.009G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.