Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	/F5H2,Pt-IFS1.57
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 672 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 556 / 0 Cytochrome P450 superfamily protein (.1) AT5G07990 304 / 2e-97 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26310 297 / 8e-95 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48320 294 / 7e-94 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT1G01280 294 / 2e-93 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT3G26300 291 / 2e-92 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT4G12300 290 / 6e-92 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 290 / 9e-92 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT5G57260 289 / 9e-92 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 663 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 660 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G084700 [exp] 346 / 5e-114 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 348 / 7e-114 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G082900 [exp] 346 / 7e-114 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 343 / 1e-112 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 342 / 4e-112 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G167900 [exp] 340 / 2e-111 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 338 / 5e-111 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028361 [exp] 645 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 632 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 627 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 614 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 613 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 605 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 591 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 521 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 484 / 1e-169 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10043308 [exp] 338 / 1e-110 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.009G123600.1 pacid=42772026 polypeptide=Potri.009G123600.1.p locus=Potri.009G123600 ID=Potri.009G123600.1.v4.1 annot-version=v4.1 ATGGATTCTCCCCTACTCCAATCTCTTCAATCTCCATCCACGCTCTTCATCTTAGCCTCCCTATTTGTCTCCCTGATCTTATGGTTTCTAATTCGTAAGA AGCTCCCGTACCCTCCTGGACCAAAAGGGTATCCGATTATAGGCAATTTGGGTATGGTTGATCAACTGACCCACCGTGGTTTAGCTAGCCTCTCTAAACG ATATGGCGGGCTCTGTCACCTCCAAATGGGAGGGCTTCATGTCGTGGCTGTGTCAACACCAGAAATAGCCCGAGAAGTCCTTCAAGCCCAAGATGTTGTC TTTGCGAATAGGCCTGCAAATGTTGCAATTGTCTACTTGACTTATGATAGAGCAGATATGGCCTTTGCCAATTACGGTCCGTTTTGGCGTCAAACTAGAA AAATCTGTGTCATGAAGCTCTTTAGCCGAAAAAGGGCTGAATCATGGGCCTCCGTGAGAGATGAAGTGGAGTTTACTGTTAGACGGGTATCGGAGAAAAC CGGTGAACCGGTTAATATCGGTGAACTAGTGTTTGCGTTAACAAGGAGCATAACGTACAAGGCCGCTTTCGGGTCATCTTCGAATGAAGGGCAAGAAGAG TTCATGGAAATTTTGCAAGAATTTTCAAAGCTTTTCGGAGCTTTTAATGTTGCTGATTTCTTCCCTTGGCTGGGCTGGGTTAACGCACAAGATTTCAATA AGAGGCTAGCCAAGGCTAGAAATTCTCTAGATGGGTTCATAGATACAATCATCGATGAACATATAGCCAAGAAAAACAACAGAAAAAGTCTCAATGCCAA AGATGAAAATGAAGAGGTCGACTCAGACATGGTTGATGAATTGCTAGCTTTTTACAGTGAAGATGCTTCAAAAAATGATTTTGATGAATCAAGGTCCACT GTCAAGTTCAATAAAGATCACATCAAAGCTCTCATTATGGATGTCATGTTTGGTGGAACTGAAACTGTGGCGTCGGCAATAGAATGGGCAATCGCAGAGT TAATGAAGAGTCCAGAAGACCTCAAGAAAGTCCACCAAGAACTCATGGACGTGGTTGGCTTGAACCGGACAGTCCATGAATCAGACCTTGAAAAACTTAT CTATCTCAAATGTGCAATGAAAGAAACCCTACGTCTCCACCCTCCGATTCCTCTCCTCCTCCACGAAACAGCTAAGGATACTGTCCTTAACGGGTATAGA ATCCCGGCAAGATCACGTGTCATGATCAATGCATGGGCTATCGGGCGTGACCCGAATGCTTGGGAAGACCCGGATAAGTTCAACCCTAGTAGGTTCTTAG ATGGGAAGGCGCCGGATTTTAGAGGGATGGATTTTGAGTTTCTTCCATTTGGGTCGGGTCGGAGGTCTTGCCCTGGCATGCAACTCGGTCTGTATGCATT AGAGTTGGCCGTGGCACATTTGCTTCATTGTTTTAATTGGGAGTTGCCTCATGGAATGAAGCCTGCTGAGCTTGATATGAACGATGTGTTTGGACTCACT GCACCAAGGGCTGTTCGACTTGTTGCTGTGCCAACTTACAGGTTGAATTGTCCCCTTTGA
AA sequence Show only first row Show all	>Potri.009G123600.1 pacid=42772026 polypeptide=Potri.009G123600.1.p locus=Potri.009G123600 ID=Potri.009G123600.1.v4.1 annot-version=v4.1 MDSPLLQSLQSPSTLFILASLFVSLILWFLIRKKLPYPPGPKGYPIIGNLGMVDQLTHRGLASLSKRYGGLCHLQMGGLHVVAVSTPEIAREVLQAQDVV FANRPANVAIVYLTYDRADMAFANYGPFWRQTRKICVMKLFSRKRAESWASVRDEVEFTVRRVSEKTGEPVNIGELVFALTRSITYKAAFGSSSNEGQEE FMEILQEFSKLFGAFNVADFFPWLGWVNAQDFNKRLAKARNSLDGFIDTIIDEHIAKKNNRKSLNAKDENEEVDSDMVDELLAFYSEDASKNDFDESRST VKFNKDHIKALIMDVMFGGTETVASAIEWAIAELMKSPEDLKKVHQELMDVVGLNRTVHESDLEKLIYLKCAMKETLRLHPPIPLLLHETAKDTVLNGYR IPARSRVMINAWAIGRDPNAWEDPDKFNPSRFLDGKAPDFRGMDFEFLPFGSGRRSCPGMQLGLYALELAVAHLLHCFNWELPHGMKPAELDMNDVFGLT APRAVRLVAVPTYRLNCPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.009G123600 [exp]	0	1	/F5H2,Pt-IFS1.57
AT4G31320			SAUR-like auxin-responsive pro...		Potri.013G054600 [exp]	6.85	0.7468	SAUR9
					Potri.002G048450 [exp]	7.34	0.8451
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045000 [exp]	8.36	0.8039
AT3G24060			Plant self-incompatibility pro...		Potri.003G175000 [exp]	13.71	0.8044
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	15.00	0.8256	SKP1.4
AT1G02810			Plant invertase/pectin methyle...		Potri.002G202600 [exp]	20.49	0.7876
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.006G048300 [exp]	23.66	0.7815
AT3G21680			unknown protein		Potri.014G153200 [exp]	24.18	0.7472
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	26.53	0.7848
					Potri.009G025001 [exp]	32.03	0.7957

Compare expression of checked genes

Potri.009G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.