Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16460 352 / 2e-124 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) AT3G51090 296 / 2e-101 Protein of unknown function (DUF1640) (.1) AT2G35090 71 / 5e-15 Protein of unknown function (DUF1640) (.1) AT2G35070 65 / 5e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016300 [exp] 315 / 1e-109 AT2G16460 311 / 2e-108 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042073 [exp] 267 / 5e-90 AT2G16460 252 / 4e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10018079 [exp] 259 / 4e-87 AT2G16460 252 / 3e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10041812 [exp] 256 / 4e-86 AT2G16460 252 / 1e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07798 [poplar] [flax] DUF1640 Protein of unknown function (DUF1640)
Representative CDS sequence Show only first row Show all	>Potri.009G123700.1 pacid=42772837 polypeptide=Potri.009G123700.1.p locus=Potri.009G123700 ID=Potri.009G123700.1.v4.1 annot-version=v4.1 ATGGCTCTTTGCAGTCGAGTGGTTAGATCAGGCGTTAATTCTGCGATTTTCTTTGCAAAATCTCGAGCGATTAACCCATCATCTTCTAGTTCATTTGGTA ACAGATTTGATTACCGGCATATTTCGCAGCTCGTTAGACCTAACAACAATAAACGCGCATTTCTCGTTGATACTTTAGCACTGGTGAGAGGATTGGAATC GCAAGGCGTGCCGTCGAAGCAAGCGGAGGCGATTACGGCTGCGATTACTGAAGTGTTGAATGATAGTTTGGAGAATGTCGCTTATTCTTTTGTTTCTAAG GCAGAAATGCAGAAGAGTGAAATGATTCAAGACTCAAATCTGTCCAAGTTTAAGTCTGAAGTACAGAGTTCTCAGGAGCATCATTTTTCTTTGTTGCAAC GTGAGACTGAAAAACTACGAGGTGACATAGATAAAATGCGCAGTGAACTGAGGTATGAAATTGATAAAGTAACTGCTGGACAGCGTTTGGATTTGAATCT TGAAAGAGGACGCATTCGTGACGAGCTGGCGAATCAGAATGCAGAAACCACCAATCTCACAAACAAGCTTGATCGGGAAATTCATGCATTGAGAGCCCAC CTGGAAGCGGCAAAATACGATGTGATTAAATACTGCATAGGTACCCTCGTCTCCATATGTGCAGTTGGCATTGCAACGGTCCGTATCTTGTTGTAG
AA sequence Show only first row Show all	>Potri.009G123700.1 pacid=42772837 polypeptide=Potri.009G123700.1.p locus=Potri.009G123700 ID=Potri.009G123700.1.v4.1 annot-version=v4.1 MALCSRVVRSGVNSAIFFAKSRAINPSSSSSFGNRFDYRHISQLVRPNNNKRAFLVDTLALVRGLESQGVPSKQAEAITAAITEVLNDSLENVAYSFVSK AEMQKSEMIQDSNLSKFKSEVQSSQEHHFSLLQRETEKLRGDIDKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAH LEAAKYDVIKYCIGTLVSICAVGIATVRILL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	0	1
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	1.00	0.8445	SDH2.1
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.008G030700 [exp]	2.00	0.7645
AT5G23395		MIA40	mitochondrial intermembrane sp...		Potri.010G254600 [exp]	3.74	0.7461
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.007G026400 [exp]	3.87	0.7543	Pt-SDH1.1
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	10.39	0.7469
AT1G25520			Uncharacterized protein family...		Potri.010G128400 [exp]	11.31	0.6967
AT5G46020			unknown protein		Potri.011G060800 [exp]	11.61	0.7355
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.005G099600 [exp]	14.14	0.7735
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	16.49	0.7138	RAB1.6
AT2G28060			5'-AMP-activated protein kinas...		Potri.009G008700 [exp]	20.39	0.7018

Compare expression of checked genes

Potri.009G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.