Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16485 1065 / 0 nucleic acid binding;zinc ion binding;DNA binding (.1) AT3G51120 579 / 3e-180 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G18090 343 / 2e-100 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT5G63700 212 / 6e-58 zinc ion binding;DNA binding (.1) AT5G08430 160 / 5e-41 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G23480 105 / 8e-23 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G35605 49 / 1e-06 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 48 / 7e-06 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 47 / 1e-05 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 49 / 3e-05 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161700 [exp] 2219 / 0 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.007G016000 [exp] 783 / 0 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 744 / 0 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 265 / 3e-73 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 254 / 8e-73 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 143 / 4e-35 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.005G134500 [exp] 49 / 2e-05 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.006G120200 [exp] 48 / 8e-05 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G297400 [exp] 45 / 9e-05 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042072 [exp] 1140 / 0 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 1137 / 0 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10014271 [exp] 590 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025973 [exp] 378 / 2e-107 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 363 / 2e-103 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014272 [exp] 361 / 3e-103 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10020897 [exp] 101 / 8e-22 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10012522 [exp] 53 / 2e-06 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10019640 [exp] 50 / 1e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 50 / 1e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.009G123800.2 pacid=42772700 polypeptide=Potri.009G123800.2.p locus=Potri.009G123800 ID=Potri.009G123800.2.v4.1 annot-version=v4.1 ATGGAAACCGAAGAAAAAGGGAATTCAATAAATCTATCCAGTAGTTCTATTAAACTCGAAAACGAATCTAATTTAACAACCACAATAACAACTGCCACAA CAGACACCGAGTCTGTTCCTGAGTTGCACGAGTCGCAACTCAATGGCGCTGATACCGAATTACAACAACAACCACAACCACCACAATCCCAAACAGAAAC AACGGTTCTCGACAAGAGCGATGCTCAGGATTTTGTTTTAGGTGAATCTCAATCAGTTTCTCTTCATACGCTCGTGGTCGAGGGAGGCGAAGGCGAGGAG GTTGCGGAGGCTACAGAGGAGAGTGAGGAGATTGAGGCACCACAAGAGGATGTTGAGAAAGAAGTGGAAAATAGAGATTTGGTTGCTAAAGAGGAGAGAA ATGAGGATGTGAATGGAAACGCGAATGCTGGAAACAATGAAATGGAGACTGAGACCGGGACGGAGGGTGTTGCTGACGTGGCAGCAAAATTAGAGACATT AAGCCAGGAAGTAGAGACAGTGGAGGCGGAGGTAACTGAAGTGAAAGAGAAATTGGAAGTGGCTGAGAATATGGAGAAGAAGGATGCAGTGGAGGAGAAA AAGGAGGATGCTGACGTGGTGGACAAGGTGGAGATGGATAATGTGGTGGAGGAAGCTGAAACAGTGAAGGTGAAGGAAGAAGAAGAGGGGGCGGAGAAGA CGGGGATATCTGGCGTGGGGGGTGAAGTGGAGGCGGTGGAGCAGAAGGAAGTGACTGACTTCGTGGAAGAAGGGAAAGCGGAGAAAACAGAAGTTGCTGA TGGGGCAGGGGAAATGGAGGCCGTGGAGCTGATTGAAATGACTGAGATTGTGGAGGAAGAGAACGTAGAGAAGATGGAAGCTAACGAGGAGGAGGAAAAG CAGCCAGCCCAACAGGTTGAAATGACTGACATTGCAGAGGAAACCAGGGAGGATGAGAAAAATGAAATGACAGACATAGAGGAAATGAAGGTGGCAGAGA AAATAGAAACGACTGATGTGGCAGGAGGGATGGAGGAGGTTATTAATGAGGAAGGGGAAATGAAGGAGACAGAAAAGATTGACGTGGCAGAGGAAGGCGA TAAGGAAGAGGATACAAAAGTGGAGATGGCGGAGAAGGAGAATGAAGCAGAGGATATGTTAGATGAAATGGAAGGGGAAATGAAGGAGACAGAAATGATT GACGTGGCAGAGGAAGGCGATAAGGAAGAGGATGCGAAAGTGGAAATGGCGGAGAAGGAGAATGAAGCAGAGGATATGTTAGATGAAATGGAAGGGGCCG AAGAGGAAGTCGAGAAAGGGGGTACAAGTGGTGGTGGTGGGAAGAGGAAGCGGCAAAAGAATGCCAAAGCTCCCTCTAGAGCAACATCAAAGAAGAAGAC GGAGGAGGATGTCTGTTTCATTTGCTTTGATGGAGGTGAACTTGTGCTATGCGATCGCAGGGGTTGTCCTAAGGCTTATCATCCTTCCTGTGTTAATCGA GATGAGGCTTTCTTTCGCGCTAAAGGTCGATGGAATTGTGGTTGGCATCTATGTAGCAACTGTGAGAAGAATGCCTATTATATGTGCTATACATGTACCT TTTCATTGTGCAAGGGGTGCATTAAAGATGCTGTCATCTTATGTGTACGAGGTAACAAAGGTTTCTGTGAGACGTGTATGAAAACTGTCATGTTAATTGA AAGGAATGAGCAGGGAAACAAGGAAACGGGTCAAGTAGATTTTGATGACAAAAGTAGCTGGGAGTTTCTCTTCAAGGATTATTGGACTGATTTAAAAGAG AGGCTATCTCTAACACCAGAAGAGCTTGCTCAGGCTAAAAATCCATGGAAAGGTTCTGATTCACATGCTGGGAAGCAGGAATTGGCTGATGAGTTTTGTG ATGTGCACAATGGAGGATCAGGATCAGGACCAGACAGTTCTGAAAATGCAGAAGTCACTACCTCTAAAAGAAGGAAGCCCAAAAAACGGCTGAGGTCTCG AGCAAAGGAGAGGGATTCACCAGGCTCATCATCATGGGCTGGAGGGGAATCTGCAGATGAAAGTGTTGAGTGGGCATCAAAGGAGCTTTTGGAGTTTGTT ATGCACGTGAAGAACGGTGATAAATCTGCTTGTTCTCAATTTGATGTGCAGGCTCTTCTGCTTGAATACATAAAAAGAAACAAACTCCGTGATCCTCATC GCAAAAGTCAAATAATATGTGATTCTAGGCTTGAGAATTTGTTTGGGAAACCACGTGTGGGGCATTTTGAAATGTTAAAGCTTCTTGAATCTCATTATCT TTTGAAAGATGATTCGCAGGCAGATGATCTTCAAGGGAGTGTTGTTGATACTGAAGCTAATCAGTTGGAAGCTGATGGGAACTCTGATGCTCTTATGAAG GCAAGTAAGGATAAGCGACGAAGATCACGTAAAAAGGGTGAGGGGAGAGGACTGCAATCTAATATTGATGACTACGCAGCCATCGATATGCACAATATTA ATTTAATTTACTTGCGACGTAGTTTGCTTGAAGATCTAATTGAAGATACTGAAGCATTTTATAATAAAGTTGTTGGATCTTTTGTGAGAATAAGAATATC TGGTAGTGCTCAAAAGCAAGATTTATATCGGCTGGTCCAAATTATAGGTACAAGCAAAGCTGCTGAGCCTTATAGAGTAGGCAAAAAGATGACTAACTTT ATGCTGGAAATATTAAATTTAAACAAGACAGAGCTTGTATCGATCGATATAATCTCAAATCAAGAATTCACAGAGGATGAGTGCAAGCGTCTGCGTCAGA GCATAAAATGTGGACTTATCCATCGGTTGACTGTTGGTGACATTCAGGAAAAGGCCATGGCAATCCAGGCGGTCAGAGTTCATGATTTGTTGGAAGCAGA GATAACACGTTTCAGTCATCTCTGTGATCGAGCTAGTGATATGGGACACAGAAAGGAGCTTAGAGAATGTGTAGAGAAGTTGCAGCTTCTAAAGACACCC GAGGAGCGCCAGCGTAGATTGGAAGAAATTCCAGAAATACATGCTGACCCAAATATGGATCCAAGTCACGAGTCTGATGAAGATGAAAGTGAAACAGAAG ATAAGAGACAAGAAAACTCTCTCAGACGTAGAGGTAGTGGCTTTAGCAGGAGAGGGAGGGAGCAAATTTCCCCTCGAAAAGGAGGTTTTGCTTCAAATGA TACCTGGGGTGGATCAAGGAGTTACTCAAGCATGAATCGGGAGCCAAGCAGAAACATGACTGATAAAGGTTTCTCAAACGAAGGGGATGATTTTGGAGCT GGTGAGGCTGCGAATGAAAATTTGTGGGGTCAAGGAAGAGAAAAACCAACACAGCAGTCCCAGAGTTGGGAAATGCCAAAAACTGCTTCAAATGCATCCC AGGCTAGGAATTCTACGGTAATATCAGAATCTGTTCCTAGGGTTGCACCAGAAATTTCACCTGCAACTCCCTCTACAGTTGTCGCACAATCTACTGCTGC TAAAGTGAATGAAGCGGAAAAAATATGGCACTATAAAGATCCATCTGGAAAAAATCAAGGGCCATTTTCCATGGTGCAGCTGCGGAAATGGAGTAATACT GGATATTTCCCTGCTGATTTGAGGATATGGAGAAATACTGAGACAAAAGATGACTCCATACTTTTGACTGATGCACTGTCTGGAAATTTCCAGAGTGACC CTCCAGCAGTGGACAATAGTTTCCCGAAGACTCAATTGGTTCAGAGTCCACATCTACCATCCTCATATACTGGGAATATTGCTCAAGCTGCACCAGTTCC AGTTGAGGTCCCCAAGTACTCTACGGATAGGTGGGGTTCTGGGACAAACCTCCCTTCTCCTACACCAGGACAAACTGCCACAAGTTTGATGAAGGGGCAA GTGTTTGAAAGTCAAGTGACTCCAACTCAATCTCAACCTGTGGGTTCTGTCCTAGGAGCCAACCAATCCTCAGGAGACAATGTAGAACAGCAACATGCTA CTGTTATCTCTGGGACTCCAAAAGTGTCTCATGGAGTGAGCCCAGTGCCTAAGCTAGAAACAGGCATGCTTCCAAGCTCTTCAAATGCTCCTCAAATGCA TTCTCAATCAATGTTGACAGGTGAATCACCCAAGGTACTGGTTAATTCCCATCTGCATTCAGCACTTGATACCACTGGAGCTTCTGTTAATGCAGCTGTT GATATAAGAAGTCTCCAAAACCTGGTTCTGCCGGTGACTAGTGGTAACTCTCATGTTGGCACACATGGATGGGCTGGTTCAATTTCAAGGCCAGAAATGA ATGCCTCGCATGCTGCAGTAACTGGGACTGGATCTCAAGCATGGGGAAGTACCCAATCCCACAAGGCAGAGGCAAATAATCTGGTTTCTATGCCTTCACA GCCCAGTACCTATGGTAACTGGAGCAATGCACCAACCTCTGTCCAGAACCCCACTTCATCCTTGACTACAGGAAATCCAAGTGGGTTTTCCCCTGTGACA GGCACTGGCACCAATCCTTGGAGAGCTCCTGTTCCAGGACCATCAAACATTCAACCTTCTGCTCCATCCAGCAGACCATGGGGAATGGGTATTACAGAGA ATCAAAGCACTACTCCAAGGCAAGGTTCAGAAAACCAAAATACTGGTTGGGGGGCAATTCCGGGAAATCAAAACATGGGCTGGGGAGTATCCTTACCTGC AAATTCAAATCAGTGTTGGGTTGCTCCTGGTCAGGTCCCAGCAACTGGAAATGTGAAGCCTGTTTGGGTTGCTCCTGTCCAGGGACAAGCACCCGGAAAT GCAAATCCTGGTTGGGGTGCTCCTGTTCAGGGACAAGCACCTGGAAATGCATTTTCAGGTTGGGGACCATCTGGTCAAGGGTCTGTACCAACAAGTGCAA ACACCGCTTGGGTTCCACTCAGTCAAGGACCACCACCTCCTGGGAATGCAAATACAAATTGGGCTGTGCCTACCGGGAATGCAGGCACATGGGGAAGTGA CATGAATCAAATTGGAGATAGATTTTCAAGCCCAAAGGAAAGAGGTTCTCACGGTGGAGATTCTGGTCATGGTGGAGGCAAACCATGGAATAGGCAGTCA TCATTTGGCAGAAGTGGAGACTCTCCCAGACCTTCATTTAAAGGGCAGAGAGTGTGCAAATACCATGAACATGGGCATTGCAAAAAAGGATCTTCATGTG ATTATTTGCATACTTGA
AA sequence Show only first row Show all	>Potri.009G123800.2 pacid=42772700 polypeptide=Potri.009G123800.2.p locus=Potri.009G123800 ID=Potri.009G123800.2.v4.1 annot-version=v4.1 METEEKGNSINLSSSSIKLENESNLTTTITTATTDTESVPELHESQLNGADTELQQQPQPPQSQTETTVLDKSDAQDFVLGESQSVSLHTLVVEGGEGEE VAEATEESEEIEAPQEDVEKEVENRDLVAKEERNEDVNGNANAGNNEMETETGTEGVADVAAKLETLSQEVETVEAEVTEVKEKLEVAENMEKKDAVEEK KEDADVVDKVEMDNVVEEAETVKVKEEEEGAEKTGISGVGGEVEAVEQKEVTDFVEEGKAEKTEVADGAGEMEAVELIEMTEIVEEENVEKMEANEEEEK QPAQQVEMTDIAEETREDEKNEMTDIEEMKVAEKIETTDVAGGMEEVINEEGEMKETEKIDVAEEGDKEEDTKVEMAEKENEAEDMLDEMEGEMKETEMI DVAEEGDKEEDAKVEMAEKENEAEDMLDEMEGAEEEVEKGGTSGGGGKRKRQKNAKAPSRATSKKKTEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNR DEAFFRAKGRWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMKTVMLIERNEQGNKETGQVDFDDKSSWEFLFKDYWTDLKE RLSLTPEELAQAKNPWKGSDSHAGKQELADEFCDVHNGGSGSGPDSSENAEVTTSKRRKPKKRLRSRAKERDSPGSSSWAGGESADESVEWASKELLEFV MHVKNGDKSACSQFDVQALLLEYIKRNKLRDPHRKSQIICDSRLENLFGKPRVGHFEMLKLLESHYLLKDDSQADDLQGSVVDTEANQLEADGNSDALMK ASKDKRRRSRKKGEGRGLQSNIDDYAAIDMHNINLIYLRRSLLEDLIEDTEAFYNKVVGSFVRIRISGSAQKQDLYRLVQIIGTSKAAEPYRVGKKMTNF MLEILNLNKTELVSIDIISNQEFTEDECKRLRQSIKCGLIHRLTVGDIQEKAMAIQAVRVHDLLEAEITRFSHLCDRASDMGHRKELRECVEKLQLLKTP EERQRRLEEIPEIHADPNMDPSHESDEDESETEDKRQENSLRRRGSGFSRRGREQISPRKGGFASNDTWGGSRSYSSMNREPSRNMTDKGFSNEGDDFGA GEAANENLWGQGREKPTQQSQSWEMPKTASNASQARNSTVISESVPRVAPEISPATPSTVVAQSTAAKVNEAEKIWHYKDPSGKNQGPFSMVQLRKWSNT GYFPADLRIWRNTETKDDSILLTDALSGNFQSDPPAVDNSFPKTQLVQSPHLPSSYTGNIAQAAPVPVEVPKYSTDRWGSGTNLPSPTPGQTATSLMKGQ VFESQVTPTQSQPVGSVLGANQSSGDNVEQQHATVISGTPKVSHGVSPVPKLETGMLPSSSNAPQMHSQSMLTGESPKVLVNSHLHSALDTTGASVNAAV DIRSLQNLVLPVTSGNSHVGTHGWAGSISRPEMNASHAAVTGTGSQAWGSTQSHKAEANNLVSMPSQPSTYGNWSNAPTSVQNPTSSLTTGNPSGFSPVT GTGTNPWRAPVPGPSNIQPSAPSSRPWGMGITENQSTTPRQGSENQNTGWGAIPGNQNMGWGVSLPANSNQCWVAPGQVPATGNVKPVWVAPVQGQAPGN ANPGWGAPVQGQAPGNAFSGWGPSGQGSVPTSANTAWVPLSQGPPPPGNANTNWAVPTGNAGTWGSDMNQIGDRFSSPKERGSHGGDSGHGGGKPWNRQS SFGRSGDSPRPSFKGQRVCKYHEHGHCKKGSSCDYLHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	0	1
					Potri.003G148601 [exp]	2.44	0.9438
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	3.00	0.9437
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	3.16	0.9337
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	3.87	0.8939
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	4.00	0.9431	SDG904
					Potri.008G016200 [exp]	4.58	0.9177
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	4.89	0.9054
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	4.89	0.9171
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	6.00	0.9132
AT5G53440			unknown protein		Potri.012G013800 [exp]	6.32	0.9124

Compare expression of checked genes

Potri.009G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.