Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39010 722 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 582 / 0 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G70710 579 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 565 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 545 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 544 / 0 ATCEL2 cellulase 2 (.1) AT1G22880 494 / 2e-172 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 489 / 3e-170 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G23560 429 / 6e-147 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G64390 432 / 3e-146 ATGH9C2 glycosyl hydrolase 9C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G162200 [exp] 872 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 589 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 583 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 551 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 545 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 536 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.015G127900 [exp] 524 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 507 / 4e-177 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 505 / 1e-176 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042071 [exp] 724 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10018077 [exp] 723 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10031090 [exp] 665 / 0 AT4G39010 614 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10029071 [exp] 575 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 551 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 523 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10027205 [exp] 519 / 0 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10034199 [exp] 517 / 0 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 507 / 3e-177 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10027201 [exp] 492 / 8e-171 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.009G123900.1 pacid=42770754 polypeptide=Potri.009G123900.1.p locus=Potri.009G123900 ID=Potri.009G123900.1.v4.1 annot-version=v4.1 ATGAACAACCTCCCCCGCATCCATTACTTTCTTCTTCTCGCCACACTACTCACTCAACTACCCTTGTTTCAGTCAAGCTACCATGAGTACCAAGAAGCAT TATCAAAATCCATTCTTTTCTTCGAGGGTCAAAGGTCAGGCTACTTGCCACAAGACCAGCGTGTAACTTGGCGTGCTAACTCAGGGCTAAGTGATGGATG GACATACAACACAGAACTGACCGGTGGCTACTATGATGCCGGGGATAATGTCAAGTTTGGCTTCCCCATGGCATTTACAACTACAATGTTGTCTTGGAGT GTGATTGAATTTGGAGATTTAATGCCTCCAAATGAATTGAGAAATAGCTTAGTCGCCATTCGCTGGGCCACTGATTATCTGCTCAAGACAGTTTCTCAGC CTAACCGGATTTTTGTTCAGGTGGGAGATCCACATGCAGACCATAATTGTTGGGAAAGACCGGAAGACATGGATACTCCTAGGACTGTCTATGCCGTGGA TGCACCAAACCCGGCATCTGATGTTGCCGGCGAGACTGCGGCAGCTCTGGCAGCCTCGTCTATGGCATTTCGATCGTCGGACCCAGGTTATGCAGAAACA TTGTTAAGAAATGCCATTAAGGCCTTCCAATTTGCTGACAGTTATAGAGGAGCTTACAGTGACAACTCCAATATAAGAGATGGTGCATGCCCGTTCTATT GTGATTTTGATGGTTATCAAGATGAGTTGCTATGGGGAGCAGCCTGGCTTAGAAGGGCATCTTCTGATGACACTTACCTTAGTTACTTGCAAAATAATGG CAAGACCCTTGGTGCTGATGACAACATTAATGAGTTTGGCTGGGACAACAAGCATGCTGGTCTTAATGTTCTTGTCTCCAAGGAAGTTCTAGAAGGAAAC ATGTACTCTCTCCAATCGTACAAAGCATCGGCCGATAGCTTCATGTGCACCCTTATACCTGAATCATCATCCTCGCACATAGAATACAGTCCTGGTGGCC TCATCTACAAGCCAGGAGGGAGCAACCTGCAGCATGCAACAACAATTTCGTTCTTGCTAGTTGCTTATGCAAATTACCTCGAACGAACATCTCAAGCGGT CAACTGTGGAAATGTAAATGTCGGTCCATATTCGCTTCGTCAACAAGCGAAGAGGCAAGTTGATTACATTTTAGGTGATAACCCTATGGGGTTATCATAT ATGGTCGGATATAGTGATCATTATCCTCAACGGATTCATCACCGTGGCTCGTCGTTGCCGTCGGTTAAGGATCACCCTGAATTTATAGCTTGCAAAGAGG GTTCAGTCTACTTTAATTCATCAAATCCTAACCCTAATGTTCATGTTGGGGCCATTGTGGGGGGACCTAGTCAAGATGATTCGTATGATGATAATCGAGA TGATTTTAGAAAGTCCGAGCCAACGACTTATATTAATGCGCCATTTGTTGGCGTGCTCGCTTATTTTGCAGCAAATCCCAATTTTAGTTGA
AA sequence Show only first row Show all	>Potri.009G123900.1 pacid=42770754 polypeptide=Potri.009G123900.1.p locus=Potri.009G123900 ID=Potri.009G123900.1.v4.1 annot-version=v4.1 MNNLPRIHYFLLLATLLTQLPLFQSSYHEYQEALSKSILFFEGQRSGYLPQDQRVTWRANSGLSDGWTYNTELTGGYYDAGDNVKFGFPMAFTTTMLSWS VIEFGDLMPPNELRNSLVAIRWATDYLLKTVSQPNRIFVQVGDPHADHNCWERPEDMDTPRTVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYAET LLRNAIKAFQFADSYRGAYSDNSNIRDGACPFYCDFDGYQDELLWGAAWLRRASSDDTYLSYLQNNGKTLGADDNINEFGWDNKHAGLNVLVSKEVLEGN MYSLQSYKASADSFMCTLIPESSSSHIEYSPGGLIYKPGGSNLQHATTISFLLVAYANYLERTSQAVNCGNVNVGPYSLRQQAKRQVDYILGDNPMGLSY MVGYSDHYPQRIHHRGSSLPSVKDHPEFIACKEGSVYFNSSNPNPNVHVGAIVGGPSQDDSYDDNRDDFRKSEPTTYINAPFVGVLAYFAANPNFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	1.73	0.8408
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	2.00	0.7994
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	3.46	0.7637
AT3G61490			Pectin lyase-like superfamily ...		Potri.002G162400 [exp]	4.24	0.7101
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	5.91	0.7146
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	9.94	0.6687
AT5G24580			Heavy metal transport/detoxifi...		Potri.012G007300 [exp]	13.85	0.7405
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	14.69	0.6208
					Potri.017G063200 [exp]	15.87	0.6313
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	16.58	0.6649	PtrWBC5-1

Compare expression of checked genes

Potri.009G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.